Cluster no. 100

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Cluster is part of supercluster: 51

Cluster characteristics:

size 13847
size_real 13847
ecount 107307
supercluster 51
annotations_summary 14.46% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT
13.61% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT
9.77% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RH
7.98% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG
5.96% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-PROT
3.32% organelle/mitochondria
0.77% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-CHDII
0.01% Class_I/LTR/Ty1_copia/Ivana:Ty1-RH
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH
0.01% organelle/plastid
pair_completeness 0.766875079749904
pbs_score None
TR_score None
TR_monomer_length None
loop_index 7.22178089116776e-05
satellite_probability 4.71413703996316e-23
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 460 3.3e-02
plastid plastid 1 7.2e-05
Ivana Ty1-RH Ivana Ty1-RH 2 1.4e-04
CRM Ty3-CHDII CRM Ty3-CHDII 106 7.7e-03
CRM Ty3-GAG CRM Ty3-GAG 1105 8.0e-02
CRM Ty3-INT CRM Ty3-INT 2002 1.4e-01
CRM Ty3-PROT CRM Ty3-PROT 825 6.0e-02
CRM Ty3-RH CRM Ty3-RH 1353 9.8e-02
Reina Ty3-RH Reina Ty3-RH 1 7.2e-05
CRM Ty3-RT CRM Ty3-RT 1885 1.4e-01

clusters with similarity:

Cluster Number of similarity hits
191 19
38 14
36 8
3 1
31 1
53 1
167 1
172 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
191 53 0.0289
17 18 0.00274
38 15 0.00724
950 14 0.0151
1450 13 0.014
863 11 0.0118
31 10 0.00172
1200 10 0.0107
2260 9 0.00975
2330 9 0.00978
10300 9 0.0098
1500 8 0.00868
11 7 0.0016
158 7 0.00379
3 6 0.00135
6 6 0.0013
99 6 0.00382
134 6 0.00281
2790 6 0.00652
9360 6 0.00654
20200 6 0.00655
4 5 0.00118
48 5 0.00123
63 5 0.00131
79 5 0.00154
3680 5 0.00543
3860 5 0.00543
4730 5 0.00543
4760 5 0.00543
6040 5 0.00545
15600 5 0.00545
20100 5 0.00546
27200 5 0.00546
2 4 0.000628
8 4 0.00163
15 4 0.00125
22 4 0.00113
33 4 0.00183
102 4 0.00125
743 4 0.00431
2690 4 0.00433
15700 4 0.00436
20600 4 0.00437
20900 4 0.00436
26000 4 0.00437
27000 4 0.00437
37100 4 0.00437
39700 4 0.00437
7 3 0.000563
9 3 0.000864
16 3 0.000889
20 3 0.000705
29 3 0.00113
30 3 0.000677
34 3 0.000935
37 3 0.000762
42 3 0.00113
53 3 0.000809
58 3 0.00175
67 3 0.000999
69 3 0.00155
74 3 0.00129
90 3 0.000921
143 3 0.00144
145 3 0.00131
148 3 0.00155
151 3 0.00168
163 3 0.00138
167 3 0.00135
168 3 0.00147
179 3 0.002
221 3 0.00261
222 3 0.00235
230 3 0.00281
245 3 0.00199
1990 3 0.00324
4010 3 0.00325
5140 3 0.00326
14200 3 0.00327
18100 3 0.00328
75500 3 0.00328
82000 3 0.00328
1 2 0.000461
12 2 0.000411
14 2 0.000479
19 2 0.000731
24 2 0.000514
27 2 0.000914
28 2 0.000873
35 2 0.000494
36 2 0.00083
39 2 0.000866
41 2 0.000527
46 2 0.000823
51 2 0.00054
54 2 0.00107
56 2 0.00176
66 2 0.000548
72 2 0.000933
73 2 0.00116
78 2 0.000596
82 2 0.00107
84 2 0.000826
87 2 0.000914
88 2 0.000632
89 2 0.000912
94 2 0.00166
96 2 0.00106
98 2 0.00113
107 2 0.00125
110 2 0.00114
115 2 0.000762
121 2 0.00141
138 2 0.00123
139 2 0.00101
147 2 0.000574
149 2 0.00127
166 2 0.00127
170 2 0.00102
175 2 0.00134
183 2 0.0012
2650 2 0.00217
3750 2 0.00218
6270 2 0.00218
6570 2 0.00218
6670 2 0.00218
10100 2 0.00218
14600 2 0.00218
17600 2 0.00218
18700 2 0.00218
18700 2 0.00218
21200 2 0.00218
22600 2 0.00219
23200 2 0.00219
26500 2 0.00219
27600 2 0.00219
30800 2 0.00218
31700 2 0.00219
36100 2 0.00218
36800 2 0.00219
37700 2 0.00218
38400 2 0.00219
38900 2 0.00218
40500 2 0.00218
59900 2 0.00219
63600 2 0.00219
70400 2 0.00219
71100 2 0.00219
74700 2 0.00219
79900 2 0.00219
99000 2 0.00219
102000 2 0.00219
114000 2 0.00219
136000 2 0.00219
140000 2 0.00219
150000 2 0.00219
151000 2 0.00219
172000 2 0.00219
173000 2 0.00219
178000 2 0.00219
189000 2 0.00219
197000 2 0.00219
198000 2 0.00219
201000 2 0.00219
206000 2 0.00219
221000 2 0.00219
223000 2 0.00219
275000 2 0.00219
297000 2 0.00219
308000 2 0.00219
318000 2 0.00219
329000 2 0.00219
5 1 0.000411
10 1 0.000446
13 1 0.00043
18 1 0.000374
21 1 0.000316
25 1 0.000373
26 1 0.000343
43 1 0.000291
44 1 0.000261
47 1 0.000301
50 1 0.000401
52 1 0.000371
55 1 0.00022
59 1 0.000508
60 1 0.000514
64 1 0.000566
65 1 0.000463
70 1 0.000573
76 1 0.000451
77 1 0.000468
81 1 0.000323
85 1 0.000454
86 1 0.000302
91 1 0.000639
95 1 0.000543
97 1 0.000411
103 1 0.000349
105 1 0.000429
109 1 0.000629
111 1 0.000294
113 1 0.000461
114 1 0.000653
117 1 0.000486
118 1 0.00059
126 1 0.000495
133 1 0.000277
135 1 0.000539
136 1 0.000673
137 1 0.000546
140 1 0.000356
144 1 0.000711
150 1 0.000535
152 1 0.000382
154 1 0.000691
156 1 0.000577
157 1 0.000599
159 1 0.000589
160 1 0.000574
164 1 0.00089
171 1 0.000574
172 1 0.000486
181 1 0.000607
182 1 0.000594
184 1 0.000762
194 1 0.000917
199 1 0.000849
203 1 0.000688
205 1 0.000651
206 1 0.000734
208 1 0.000766
214 1 0.000817
223 1 0.000806
226 1 0.000894
231 1 0.000911
238 1 0.000837
249 1 0.000864
250 1 0.000937
260 1 0.000903
262 1 0.00103
274 1 0.00101
275 1 0.00102
287 1 0.00101
288 1 0.000864
313 1 0.000965
328 1 0.000974
339 1 0.00101
364 1 0.00102
390 1 0.00104
442 1 0.00101
510 1 0.00104
575 1 0.00108
773 1 0.00108
940 1 0.00108
1130 1 0.00108
1160 1 0.00109
1700 1 0.00108
2080 1 0.00109
2700 1 0.00109
2970 1 0.00109
5190 1 0.00109
5300 1 0.00109
5470 1 0.00109
5510 1 0.00109
6110 1 0.00109
8170 1 0.00109
8610 1 0.00109
9550 1 0.00109
11800 1 0.00109
12500 1 0.00109
12700 1 0.00109
12800 1 0.00109
13100 1 0.00109
13800 1 0.00109
13800 1 0.00109
15200 1 0.00109
17300 1 0.00109
18100 1 0.00109
18800 1 0.00109
19600 1 0.00109
19800 1 0.00109
20800 1 0.00109
20900 1 0.00109
22500 1 0.00109
23800 1 0.00109
24300 1 0.00109
25200 1 0.00109
25300 1 0.00109
25400 1 0.00109
26000 1 0.00109
27000 1 0.00109
29200 1 0.00109
30900 1 0.00109
31000 1 0.00109
31000 1 0.00109
31700 1 0.00109
31700 1 0.00109
32600 1 0.00109
32900 1 0.00109
34200 1 0.00109
35000 1 0.00109
36300 1 0.00109
39500 1 0.00109
39900 1 0.00109
40200 1 0.00109
41200 1 0.00109
41600 1 0.00109
42500 1 0.00109
42500 1 0.00109
44000 1 0.00109
45400 1 0.00109
46000 1 0.00109
48800 1 0.00109
49600 1 0.00109
54400 1 0.00109
57900 1 0.00109
59600 1 0.00109
61100 1 0.00109
66500 1 0.00109
68100 1 0.00109
68500 1 0.00109
70900 1 0.00109
71500 1 0.00109
72200 1 0.00109
75300 1 0.00109
77700 1 0.00109
80900 1 0.00109
81200 1 0.00109
82000 1 0.00109
82300 1 0.00109
82600 1 0.00109
83600 1 0.00109
85100 1 0.00109
85500 1 0.00109
90100 1 0.00109
93100 1 0.00109
96200 1 0.00109
1e+05 1 0.00109
101000 1 0.00109
103000 1 0.00109
107000 1 0.00109
110000 1 0.00109
114000 1 0.00109
122000 1 0.00109
122000 1 0.00109
126000 1 0.00109
129000 1 0.00109
137000 1 0.00109
140000 1 0.00109
149000 1 0.00109
150000 1 0.00109
155000 1 0.00109
156000 1 0.00109
164000 1 0.00109
167000 1 0.00109
175000 1 0.00109
186000 1 0.00109
190000 1 0.00109
192000 1 0.00109
195000 1 0.00109
196000 1 0.00109
196000 1 0.00109
199000 1 0.00109
219000 1 0.00109
220000 1 0.00109
221000 1 0.00109
223000 1 0.00109
246000 1 0.00109
246000 1 0.00109
251000 1 0.00109
266000 1 0.00109
267000 1 0.00109
268000 1 0.00109
274000 1 0.00109
275000 1 0.00109
281000 1 0.00109
282000 1 0.00109
283000 1 0.00109
286000 1 0.00109
290000 1 0.00109
294000 1 0.00109
308000 1 0.00109
311000 1 0.00109
315000 1 0.00109
316000 1 0.00109
319000 1 0.00109
321000 1 0.00109
335000 1 0.00109
337000 1 0.00109
342000 1 0.00109

CL100 ----> CL191

image

No. of shared pairs: :53

CL100 ----> CL17

image

No. of shared pairs: :18

CL100 ----> CL38

image

No. of shared pairs: :15

CL100 ----> CL950

image

No. of shared pairs: :14

CL100 ----> CL1450

image

No. of shared pairs: :13

CL100 ----> CL863

image

No. of shared pairs: :11

CL100 ----> CL31

image

No. of shared pairs: :10

CL100 ----> CL1203

image

No. of shared pairs: :10