Cluster no. 101

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Cluster is part of supercluster: 1

Cluster characteristics:

size 13740
size_real 13740
ecount 1895401
supercluster 1
annotations_summary 0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-PROT
pair_completeness 0.645706072583543
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00218340611353712
satellite_probability 3.68527499034017e-22
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Tekay Ty3-PROT Tekay Ty3-PROT 1 7.3e-05

clusters with similarity:

Cluster Number of similarity hits
1 44900
52 18600
106 723
43 264
57 16
67 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
1 1230 0.25
52 1180 0.362
106 44 0.0155
43 30 0.0075
31 14 0.0022
19 8 0.00242
3 7 0.0014
17 7 0.000983
102 7 0.00186
79 6 0.00157
9 5 0.00124
72 5 0.00185
576 5 0.00335
6 4 0.000773
8 4 0.00133
14 4 0.000844
41 4 0.000917
57 4 0.00162
4 3 0.000624
12 3 0.000552
15 3 0.000794
21 3 0.000804
22 3 0.000729
33 3 0.00109
35 3 0.00065
42 3 0.000931
54 3 0.00123
67 3 0.000841
74 3 0.00104
103 3 0.000875
160 3 0.0013
5 2 0.000667
7 2 0.000339
16 2 0.000507
18 2 0.000617
20 2 0.000415
27 2 0.000726
29 2 0.00062
30 2 4e-04
32 2 0.000688
47 2 0.000514
80 2 0.000717
83 2 0.00076
85 2 0.000722
91 2 0.000938
96 2 0.000817
97 2 0.000667
107 2 0.000925
109 2 0.000928
114 2 0.000954
120 2 0.00073
124 2 0.000851
126 2 0.000773
144 2 0.00101
148 2 8e-04
153 2 0.000727
166 2 0.000934
168 2 0.000767
182 2 0.000889
208 2 0.00107
222 2 0.00109
245 2 0.000964
181000 2 0.00135
2 1 0.000144
10 1 0.000356
11 1 0.000203
13 1 0.000346
23 1 0.000267
25 1 0.000308
28 1 0.00035
34 1 0.000265
36 1 0.000336
37 1 0.000222
39 1 0.000348
40 1 0.000202
44 1 0.000228
46 1 0.000334
51 1 0.000234
53 1 0.000234
56 1 0.000588
59 1 0.000395
60 1 0.000398
62 1 0.000245
63 1 0.000228
64 1 0.000429
66 1 0.000237
68 1 0.000347
69 1 4e-04
76 1 0.000359
77 1 0.00037
81 1 0.000273
82 1 0.000411
84 1 0.000335
88 1 0.000268
92 1 0.000482
94 1 0.000564
98 1 0.000427
104 1 0.000438
105 1 0.000346
108 1 0.000442
110 1 0.00043
112 1 0.000471
115 1 0.000314
116 1 0.000287
117 1 0.000381
119 1 0.000498
121 1 0.000505
122 1 0.000375
129 1 0.000486
131 1 0.000576
132 1 0.000453
133 1 0.00024
134 1 0.00037
135 1 0.000413
138 1 0.000456
147 1 0.000247
151 1 0.000426
152 1 0.000314
154 1 0.000497
155 1 0.000455
158 1 0.000414
159 1 0.000442
169 1 0.000456
176 1 0.000511
177 1 0.000523
180 1 0.000532
181 1 0.000452
183 1 0.000447
189 1 0.000412
190 1 0.00045
191 1 0.000417
195 1 0.000543
197 1 0.000421
199 1 0.000574
204 1 0.00056
207 1 0.000576
220 1 0.000536
228 1 0.000584
238 1 0.000568
267 1 0.00054
279 1 0.000583
287 1 0.000641
360 1 0.000627
381 1 0.000625
419 1 0.000664
437 1 0.00065
694 1 0.000668
726 1 0.000672
1100 1 0.000672
1240 1 0.000671
2380 1 0.000673
3500 1 0.000674
3790 1 0.000673
4090 1 0.000674
4540 1 0.000674
4800 1 0.000674
5060 1 0.000674
6380 1 0.000674
6700 1 0.000674
7940 1 0.000675
8630 1 0.000674
9970 1 0.000675
11000 1 0.000675
12200 1 0.000675
14900 1 0.000675
18800 1 0.000676
28600 1 0.000675
29600 1 0.000675
34200 1 0.000676
57900 1 0.000675
64900 1 0.000675
75200 1 0.000676
102000 1 0.000676
199000 1 0.000676
249000 1 0.000676
249000 1 0.000676
272000 1 0.000676
280000 1 0.000676
318000 1 0.000676
319000 1 0.000676
338000 1 0.000676
349000 1 0.000676

CL101 ----> CL1

image

No. of shared pairs: :1227

CL101 ----> CL52

image

No. of shared pairs: :1181

CL101 ----> CL106

image

No. of shared pairs: :44

CL101 ----> CL43

image

No. of shared pairs: :30

CL101 ----> CL31

image

No. of shared pairs: :14