Cluster no. 103

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Cluster is part of supercluster: 2

Cluster characteristics:

size 13693
size_real 13693
ecount 8578383
supercluster 2
annotations_summary 78.32% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.12% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-INT
0.11% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.04% Class_I/LTR/Ty3_gypsy/chromovirus/chromo-unclass:Ty3-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/chromo-outgroup:Ty3-INT
pair_completeness 0.556907333712336
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00817936171766596
satellite_probability 5.16082916357076e-21
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Galadriel Ty3-INT Galadriel Ty3-INT 16 1.2e-03
Reina Ty3-INT Reina Ty3-INT 10725 7.8e-01
Tekay Ty3-INT Tekay Ty3-INT 15 1.1e-03
chromo-outgroup Ty3-INT chromo-outgroup Ty3-INT 1 7.3e-05
chromo-unclass Ty3-INT chromo-unclass Ty3-INT 5 3.7e-04

clusters with similarity:

Cluster Number of similarity hits
88 318000
62 232000
111 2
6 1
7 1
22 1
23 1
30 1
72 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
88 1660 0.396
62 1580 0.347
17 15 0.00198
31 10 0.00146
7 9 0.00141
133 9 0.00194
9 7 0.00155
48 7 0.00137
111 7 0.00158
4 6 0.00114
15 6 0.00141
30 6 0.0011
51 6 0.00127
1 5 0.000931
6 5 0.000886
22 5 0.00109
33 5 0.00155
63 5 0.00103
67 5 0.00124
71 5 0.00121
72 5 0.00157
2 4 0.000541
19 4 0.00106
23 4 0.000948
24 4 0.000812
36 4 0.00116
66 4 0.000854
84 4 0.00116
94 4 0.00178
130 4 0.00101
134 4 0.00126
3 3 0.000547
29 3 0.000812
34 3 0.000707
44 3 0.000617
60 3 0.00101
70 3 0.00108
93 3 0.00111
97 3 0.000865
98 3 0.00107
101 3 0.000875
153 3 0.000932
161 3 0.000928
169 3 0.00113
182 3 0.0011
213 3 0.000995
245 3 0.00118
3780 3 0.00153
8 2 0.000574
12 2 0.000339
13 2 0.000595
14 2 0.000384
16 2 0.000453
20 2 0.000378
21 2 0.000476
28 2 0.000601
39 2 0.000598
40 2 0.000369
41 2 0.000414
49 2 0.000557
50 2 0.000567
57 2 0.000679
59 2 0.000666
64 2 0.000714
69 2 0.000674
74 2 0.000596
75 2 0.000412
76 2 0.000615
83 2 0.000645
85 2 0.000618
86 2 0.00046
102 2 0.000473
106 2 0.000604
109 2 0.000762
112 2 0.000772
114 2 0.000779
121 2 0.000817
122 2 0.000638
126 2 0.000654
156 2 0.000722
168 2 0.00065
202 2 0.000887
10 1 0.000305
11 1 0.000185
25 1 0.000269
26 1 0.000253
32 1 0.000296
37 1 0.000201
42 1 0.000271
43 1 0.000224
45 1 0.000221
47 1 0.000229
53 1 0.000211
55 1 0.000179
56 1 0.000461
79 1 0.000233
81 1 0.000242
89 1 0.00031
90 1 0.000233
91 1 0.000384
92 1 0.000393
96 1 0.000343
99 1 0.000384
100 1 0.000349
105 1 0.000297
107 1 0.00038
117 1 0.000323
118 1 0.000366
128 1 0.000379
129 1 0.000396
136 1 0.000397
140 1 0.00026
141 1 0.000316
142 1 0.000363
144 1 0.00041
147 1 0.000221
148 1 0.000337
149 1 0.000383
150 1 0.000344
151 1 0.000355
152 1 0.000274
157 1 0.00037
165 1 0.000322
175 1 0.000397
176 1 0.000412
179 1 0.000394
186 1 0.000313
188 1 0.000487
189 1 0.000345
196 1 0.000335
208 1 0.000427
210 1 0.000477
211 1 0.000408
214 1 0.000443
216 1 0.000451
228 1 0.000458
230 1 0.000475
232 1 0.000428
239 1 0.000444
244 1 0.000486
267 1 0.000431
286 1 0.000433
294 1 0.000474
334 1 0.000506
335 1 0.000498
464 1 0.000503
638 1 0.000505
720 1 0.00051
956 1 0.000508
1410 1 0.000512
1480 1 0.00051
2270 1 0.00051
2550 1 0.000512
3260 1 0.000512
5160 1 0.000512
6100 1 0.000512
6190 1 0.000512
9030 1 0.000512
11000 1 0.000513
14400 1 0.000513
14400 1 0.000512
16700 1 0.000513
17400 1 0.000512
23600 1 0.000513
27400 1 0.000513
29400 1 0.000513
30500 1 0.000513
33800 1 0.000513
34200 1 0.000513
38900 1 0.000513
39300 1 0.000513
42700 1 0.000513
43800 1 0.000513
50400 1 0.000513
56700 1 0.000513
60600 1 0.000513
66800 1 0.000513
73900 1 0.000513
75800 1 0.000513
79600 1 0.000513
104000 1 0.000513
106000 1 0.000513
118000 1 0.000513
143000 1 0.000513
143000 1 0.000513
150000 1 0.000513
155000 1 0.000513
155000 1 0.000513
165000 1 0.000513
212000 1 0.000513
220000 1 0.000513
230000 1 0.000513
240000 1 0.000513
245000 1 0.000513
251000 1 0.000513
252000 1 0.000513
291000 1 0.000513
3e+05 1 0.000513

CL103 ----> CL88

image

No. of shared pairs: :1664

CL103 ----> CL62

image

No. of shared pairs: :1582

CL103 ----> CL17

image

No. of shared pairs: :15

CL103 ----> CL31

image

No. of shared pairs: :10