Cluster no. 104

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Cluster is part of supercluster: 20

Cluster characteristics:

size 13619
size_real 13619
ecount 1894585
supercluster 20
annotations_summary 27.63% Class_I/LTR/Ty1_copia/Tork:Ty1-INT
11.17% Class_I/LTR/Ty1_copia/Tork:Ty1-GAG
8.60% Class_I/LTR/Ty1_copia/Tork:Ty1-PROT
0.59% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT
0.29% Class_I/LTR/Ty1_copia/Ivana:Ty1-PROT
0.07% Class_I/LTR/Ty1_copia/Ale:Ty1-PROT
0.06% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.04% organelle/mitochondria
0.04% Class_I/LTR/Ty1_copia/Alesia:Ty1-INT
0.02% Class_I/LTR/Ty1_copia/Bryco:Ty1-INT
0.01% Class_I/LTR/Ty1_copia/TAR:Ty1-INT
0.01% Class_I/LTR/Ty1_copia/Osser:Ty1-PROT
0.01% Class_I/LTR/Ty1_copia/Angela:Ty1-INT
0.01% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-INT
0.01% Class_I/LTR/Ty1_copia/Ikeros:Ty1-INT
0.01% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
pair_completeness 0.788678749671657
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.140001469831704
satellite_probability 3.8241002940334e-16
consensus None
TAREAN_annotation Other
orientation_score 0.9999942117784

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 6 4.4e-04
Tork Ty1-GAG Tork Ty1-GAG 1521 1.1e-01
Ale Ty1-INT Ale Ty1-INT 8 5.9e-04
Alesia Ty1-INT Alesia Ty1-INT 6 4.4e-04
Angela Ty1-INT Angela Ty1-INT 1 7.3e-05
Bryco Ty1-INT Bryco Ty1-INT 3 2.2e-04
Gymco-II Ty1-INT Gymco-II Ty1-INT 1 7.3e-05
Ikeros Ty1-INT Ikeros Ty1-INT 1 7.3e-05
Ivana Ty1-INT Ivana Ty1-INT 81 5.9e-03
TAR Ty1-INT TAR Ty1-INT 1 7.3e-05
Tork Ty1-INT Tork Ty1-INT 3763 2.8e-01
Ale Ty1-PROT Ale Ty1-PROT 9 6.6e-04
Ivana Ty1-PROT Ivana Ty1-PROT 39 2.9e-03
Osser Ty1-PROT Osser Ty1-PROT 1 7.3e-05
Tork Ty1-PROT Tork Ty1-PROT 1171 8.6e-02
SIRE Ty1-RT SIRE Ty1-RT 1 7.3e-05
Tekay Ty3-INT Tekay Ty3-INT 1 7.3e-05

clusters with similarity:

Cluster Number of similarity hits
95 6300
153 3840
85 5
14 1
17 1
19 1
22 1
31 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
95 521 0.301
153 450 0.217
17 16 0.00248
31 8 0.0014
14 7 0.00172
4 6 0.00145
6 6 0.00133
29 6 0.00235
3 5 0.00115
48 5 0.00127
213 5 0.00267
10 4 0.00188
23 4 0.0013
59 4 0.00215
81 4 0.00134
85 4 0.00191
102 4 0.0013
233 4 0.00418
1 3 0.000709
7 3 0.000575
9 3 0.000892
12 3 0.00063
16 3 0.000918
19 3 0.00114
20 3 0.000723
22 3 0.000872
30 3 0.000694
57 3 0.00167
63 3 0.000808
126 3 0.00157
238 3 0.00276
2 2 0.00032
8 2 0.000854
11 2 0.00047
13 2 0.000902
24 2 0.000529
33 2 0.000965
36 2 0.000869
37 2 0.000523
45 2 0.00059
46 2 0.000861
51 2 0.000557
54 2 0.00113
66 2 0.000565
67 2 0.000691
70 2 0.00122
80 2 0.000947
86 2 0.000625
89 2 0.00096
90 2 0.000635
91 2 0.00137
96 2 0.00113
97 2 0.00086
98 2 0.0012
111 2 0.000607
112 2 0.00138
115 2 0.000795
129 2 0.00145
130 2 0.000714
133 2 0.000572
137 2 0.00116
139 2 0.00106
151 2 0.0012
156 2 0.00123
176 2 0.00156
180 2 0.00166
182 2 0.00127
189 2 0.00114
217 2 0.00153
224 2 0.00225
106000 2 0.00248
278000 2 0.00248
283000 2 0.00248
342000 2 0.00248
15 1 0.000322
21 1 0.000327
27 1 0.000481
32 1 0.000448
35 1 0.000254
38 1 0.000509
41 1 0.000271
42 1 0.000393
47 1 0.000311
49 1 0.000409
50 1 0.000419
52 1 0.000387
55 1 0.000225
58 1 0.000622
68 1 0.000453
69 1 0.000548
71 1 0.000334
72 1 0.000492
74 1 0.000452
76 1 0.000474
78 1 0.000308
79 1 0.000318
82 1 0.000569
83 1 0.000511
84 1 0.000432
88 1 0.000327
92 1 0.000714
94 1 0.00091
99 1 0.000684
101 1 0.000438
105 1 0.000451
107 1 0.000672
113 1 0.000486
114 1 0.000703
117 1 0.000513
119 1 0.00075
127 1 0.000508
135 1 0.000573
142 1 0.000622
144 1 0.000771
145 1 0.000458
147 1 0.000296
148 1 0.000548
149 1 0.000682
150 1 0.000568
152 1 0.000398
154 1 0.000747
157 1 0.00064
158 1 0.000575
162 1 0.000512
165 1 0.000509
167 1 0.000473
170 1 0.000539
172 1 0.000513
177 1 0.000809
178 1 0.000792
179 1 0.000718
181 1 0.00065
185 1 0.000633
186 1 0.000487
190 1 0.000646
192 1 0.00109
194 1 0.00102
195 1 0.000857
198 1 0.000829
200 1 0.000613
209 1 0.000995
216 1 0.000932
222 1 0.000856
229 1 0.000708
235 1 0.000697
255 1 0.000805
259 1 0.000989
267 1 0.00085
289 1 0.00111
390 1 0.00118
518 1 0.00117
534 1 0.00121
645 1 0.00123
1620 1 0.00123
5140 1 0.00123
6330 1 0.00124
8760 1 0.00124
12100 1 0.00124
12400 1 0.00124
13800 1 0.00124
14700 1 0.00124
14800 1 0.00124
19600 1 0.00124
26500 1 0.00124
29600 1 0.00124
34700 1 0.00124
35900 1 0.00124
37900 1 0.00124
41200 1 0.00124
48400 1 0.00124
50700 1 0.00124
55800 1 0.00124
56100 1 0.00124
68700 1 0.00124
71400 1 0.00124
75400 1 0.00124
78600 1 0.00124
82700 1 0.00124
83900 1 0.00124
85000 1 0.00124
99900 1 0.00124
114000 1 0.00124
133000 1 0.00124
147000 1 0.00124
177000 1 0.00124
189000 1 0.00124
194000 1 0.00124
220000 1 0.00124
251000 1 0.00124
285000 1 0.00124
292000 1 0.00124
302000 1 0.00124
321000 1 0.00124
332000 1 0.00124

CL104 ----> CL95

image

No. of shared pairs: :521

CL104 ----> CL153

image

No. of shared pairs: :450

CL104 ----> CL17

image

No. of shared pairs: :16