Cluster no. 105

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Cluster is part of supercluster: 3

Cluster characteristics:

size 13596
size_real 13596
ecount 468224
supercluster 3
annotations_summary 0.19% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-GAG
pair_completeness 0.65542432728601
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.351132686084142
satellite_probability 1.82258497185206e-08
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Reina Ty3-GAG Reina Ty3-GAG 26 0.0019

clusters with similarity:

Cluster Number of similarity hits
6 3620
146 1220
32 833
3 32
31 1
37 1
67 1
130 1
213 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
6 914 0.179
32 488 0.172
146 437 0.205
3 25 0.00505
17 12 0.0017
31 11 0.00174
638 9 0.00623
471 8 0.00544
2480 8 0.00561
2 6 0.000874
37 6 0.00135
134 6 0.00227
22 5 0.00123
33 5 0.00186
67 5 0.00143
74 5 0.00177
5 4 0.00136
14 4 0.000856
15 4 0.00108
18 4 0.00126
48 4 0.000877
50 4 0.00134
65 4 0.0015
130 4 0.00117
245 4 0.00199
17500 4 0.00282
4 3 0.000632
7 3 0.000515
9 3 0.000755
21 3 0.000818
23 3 0.000814
29 3 0.000949
43 3 0.000763
49 3 0.000982
53 3 0.000713
86 3 0.000787
97 3 0.00102
98 3 0.00132
102 3 0.000811
152 3 0.000961
153 3 0.00112
238 3 0.00177
8 2 0.000677
16 2 0.000516
19 2 0.000618
28 2 0.000716
38 2 0.000777
41 2 0.000465
60 2 0.000817
62 2 0.000498
63 2 0.000463
66 2 0.000482
72 2 0.000756
77 2 0.000758
81 2 0.000556
89 2 0.000743
99 2 0.000965
106 2 0.00072
119 2 0.00103
136 2 0.00101
148 2 0.000821
158 2 0.000851
168 2 0.000786
178 2 0.00107
179 2 0.000998
182 2 0.000915
191 2 0.000856
208 2 0.00111
213 2 0.000806
219 2 0.00117
2060 2 0.0014
2840 2 0.00141
4030 2 0.00141
7660 2 0.00141
8000 2 0.00141
14200 2 0.00141
17600 2 0.00141
24000 2 0.00141
29300 2 0.00141
33000 2 0.00141
39700 2 0.00141
63500 2 0.00141
90700 2 0.00141
93200 2 0.00141
102000 2 0.00141
154000 2 0.00141
187000 2 0.00141
244000 2 0.00141
265000 2 0.00141
311000 2 0.00141
11 1 0.000206
20 1 0.00021
24 1 0.000228
26 1 0.000293
30 1 0.000203
34 1 0.00027
42 1 0.000317
45 1 0.00025
46 1 0.000341
51 1 0.000238
54 1 0.00042
55 1 0.000198
57 1 0.000415
59 1 0.000405
61 1 0.000334
64 1 0.000441
69 1 0.000411
75 1 0.000231
79 1 0.000266
84 1 0.000342
85 1 0.00037
87 1 0.000372
88 1 0.000273
92 1 0.000497
94 1 0.000585
100 1 0.000429
101 1 0.000346
103 1 0.000297
104 1 0.000451
109 1 0.000478
110 1 0.000442
112 1 0.000486
114 1 0.000492
123 1 0.000414
124 1 0.000437
127 1 0.000388
128 1 0.000476
137 1 0.000429
138 1 0.00047
141 1 0.00038
143 1 0.000388
144 1 0.000524
145 1 0.000358
157 1 0.00046
162 1 0.00039
167 1 0.000367
169 1 0.000469
170 1 0.000405
174 1 0.000406
176 1 0.000528
180 1 0.000551
181 1 0.000465
184 1 0.000551
187 1 0.000492
189 1 0.000424
192 1 0.000656
195 1 0.000563
199 1 0.000596
202 1 0.000581
205 1 0.000491
211 1 0.000522
220 1 0.000555
228 1 0.000607
250 1 0.000638
251 1 0.00063
262 1 0.000681
263 1 0.000526
273 1 0.000542
277 1 0.000647
280 1 0.000624
314 1 0.000647
325 1 0.000681
349 1 0.000666
376 1 0.000662
398 1 0.000697
405 1 0.000677
464 1 0.000687
816 1 0.000701
1140 1 0.000699
1340 1 0.000702
1710 1 0.000699
3710 1 0.000704
3820 1 0.000704
3960 1 0.000704
4270 1 0.000704
7150 1 0.000705
8220 1 0.000705
9780 1 0.000705
10500 1 0.000704
11300 1 0.000705
19200 1 0.000706
24800 1 0.000705
26200 1 0.000706
27500 1 0.000706
28000 1 0.000706
34200 1 0.000706
37800 1 0.000706
43600 1 0.000706
49000 1 0.000706
52100 1 0.000706
57100 1 0.000706
57100 1 0.000706
60300 1 0.000706
61400 1 0.000706
62000 1 0.000706
62900 1 0.000706
65800 1 0.000706
70300 1 0.000706
73700 1 0.000706
77500 1 0.000706
81100 1 0.000706
107000 1 0.000706
120000 1 0.000706
124000 1 0.000706
143000 1 0.000706
148000 1 0.000706
153000 1 0.000706
154000 1 0.000706
164000 1 0.000706
179000 1 0.000706
181000 1 0.000706
193000 1 0.000706
193000 1 0.000706
195000 1 0.000706
206000 1 0.000706
217000 1 0.000706
236000 1 0.000706
262000 1 0.000706
265000 1 0.000706
285000 1 0.000706
298000 1 0.000706
310000 1 0.000706
316000 1 0.000706

CL105 ----> CL6

image

No. of shared pairs: :914

CL105 ----> CL32

image

No. of shared pairs: :488

CL105 ----> CL146

image

No. of shared pairs: :437

CL105 ----> CL3

image

No. of shared pairs: :25

CL105 ----> CL17

image

No. of shared pairs: :12

CL105 ----> CL31

image

No. of shared pairs: :11