Cluster no. 107

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Cluster is part of supercluster: 16

Cluster characteristics:

size 13454
size_real 13454
ecount 2845236
supercluster 16
annotations_summary 1.71% Class_I/LTR/Ty1_copia/Ivana:Ty1-PROT
1.03% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-PROT
0.59% Class_I/LTR/Ty1_copia/Alesia:Ty1-GAG
0.38% Class_I/LTR/Ty1_copia/Ale:Ty1-PROT
0.16% Class_I/LTR/Ty1_copia/Gymco-I:Ty1-PROT
0.13% Class_I/LTR/Ty1_copia/Tork:Ty1-PROT
0.05% Class_I/LTR/Ty1_copia/TAR:Ty1-PROT
0.04% Class_I/LTR/Ty1_copia/SIRE:Ty1-PROT
0.04% Class_I/LTR/Ty1_copia/Bryco:Ty1-PROT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT
0.01% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
pair_completeness 0.815654520917679
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00557455031960755
satellite_probability 2.82833761501769e-22
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Alesia Ty1-GAG Alesia Ty1-GAG 79 5.9e-03
Ale Ty1-INT Ale Ty1-INT 1 7.4e-05
Ale Ty1-PROT Ale Ty1-PROT 51 3.8e-03
Bryco Ty1-PROT Bryco Ty1-PROT 5 3.7e-04
Gymco-I Ty1-PROT Gymco-I Ty1-PROT 22 1.6e-03
Gymco-II Ty1-PROT Gymco-II Ty1-PROT 138 1.0e-02
Ivana Ty1-PROT Ivana Ty1-PROT 230 1.7e-02
SIRE Ty1-PROT SIRE Ty1-PROT 5 3.7e-04
TAR Ty1-PROT TAR Ty1-PROT 7 5.2e-04
Tork Ty1-PROT Tork Ty1-PROT 17 1.3e-03
Athila Ty3-INT Athila Ty3-INT 1 7.4e-05

clusters with similarity:

Cluster Number of similarity hits
155 27200
85 214
173 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
155 591 0.422
85 279 0.141
132 7 0.00495
4 5 0.00125
9 5 0.00154
15 5 0.00168
17 5 0.00079
49 5 0.00215
3 4 0.000948
14 4 0.00101
19 4 0.0016
23 4 0.00135
31 4 0.000717
36 4 0.00184
41 4 0.00112
47 4 0.00129
48 4 0.00104
66 4 0.00117
67 4 0.00144
133 4 0.00118
5 3 0.00136
7 3 0.000589
10 3 0.00149
18 3 0.00123
21 3 0.00102
27 3 0.00153
29 3 0.00123
50 3 0.00133
51 3 0.000865
78 3 0.00096
98 3 0.00194
99 3 0.00224
138 3 0.00215
159 3 0.00204
6 2 0.000457
11 2 0.000484
12 2 0.000431
13 2 0.000954
16 2 0.000636
28 2 0.00097
30 2 0.000476
32 2 0.000948
38 2 0.00109
61 2 0.000883
63 2 0.000557
71 2 0.000696
74 2 0.000956
77 2 0.00105
84 2 0.000913
92 2 0.00156
100 2 0.00125
101 2 0.000925
102 2 0.000674
108 2 0.00136
112 2 0.00151
114 2 0.00154
120 2 0.00103
122 2 0.00107
126 2 0.00112
127 2 0.00108
130 2 0.000747
134 2 0.00105
135 2 0.00123
136 2 0.00159
145 2 0.000969
148 2 0.00117
179 2 0.00157
193 2 0.00177
194 2 0.00233
245 2 0.00156
261000 2 0.00292
335000 2 0.00292
2 1 0.000163
8 1 0.00045
20 1 0.000248
22 1 0.000301
26 1 0.000372
33 1 0.000512
34 1 0.000336
35 1 0.000262
39 1 0.000481
40 1 0.000241
42 1 0.000412
43 1 0.000312
44 1 0.000278
46 1 0.000454
53 1 0.000287
56 1 0.00111
58 1 0.000672
59 1 0.000575
62 1 0.000304
65 1 0.000518
69 1 0.000587
70 1 0.00066
73 1 0.000666
75 1 0.000279
76 1 0.000503
80 1 0.000502
82 1 0.000611
83 1 0.000545
86 1 0.000325
88 1 0.000341
89 1 0.00051
90 1 0.00033
91 1 0.000749
93 1 0.000698
94 1 0.00102
95 1 0.000621
96 1 0.000606
97 1 0.000454
103 1 0.00038
104 1 0.000672
106 1 0.000489
109 1 0.000736
113 1 0.000516
116 1 0.000372
119 1 0.000825
121 1 0.000845
124 1 0.000644
125 1 0.000707
129 1 0.000793
137 1 0.000625
140 1 0.000388
142 1 0.000672
143 1 0.000541
144 1 0.00085
146 1 0.000714
147 1 0.000307
149 1 0.000743
150 1 0.00061
151 1 0.000645
152 1 0.000418
153 1 0.000512
158 1 0.000618
160 1 0.000661
163 1 0.000516
165 1 0.000543
168 1 0.000552
173 1 0.000859
174 1 0.000579
181 1 0.000706
189 1 0.000614
195 1 0.000957
205 1 0.000766
208 1 0.00093
211 1 0.000844
212 1 0.00099
218 1 0.00113
251 1 0.00117
252 1 0.00105
254 1 0.00122
263 1 0.000856
271 1 0.00128
272 1 0.000956
275 1 0.00134
286 1 0.000958
337 1 0.00137
360 1 0.00125
361 1 0.00129
378 1 0.0013
457 1 0.00133
523 1 0.0014
534 1 0.00142
1220 1 0.00144
1500 1 0.00144
3300 1 0.00144
3650 1 0.00145
4430 1 0.00145
6020 1 0.00146
6720 1 0.00146
7340 1 0.00146
15900 1 0.00146
18800 1 0.00146
22600 1 0.00146
24100 1 0.00146
24500 1 0.00146
25800 1 0.00146
44300 1 0.00146
45400 1 0.00146
58500 1 0.00146
65700 1 0.00146
66300 1 0.00146
93800 1 0.00146
113000 1 0.00146
223000 1 0.00146
257000 1 0.00146
270000 1 0.00146
279000 1 0.00146
294000 1 0.00146
297000 1 0.00146
307000 1 0.00146
309000 1 0.00146
313000 1 0.00146
339000 1 0.00146

CL107 ----> CL155

image

No. of shared pairs: :591

CL107 ----> CL85

image

No. of shared pairs: :279