Cluster no. 108

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Cluster is part of supercluster: 1

Cluster characteristics:

size 13392
size_real 13392
ecount 713726
supercluster 1
annotations_summary 20.18% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-aRH
pair_completeness 0.790374331550802
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000970728793309438
satellite_probability 3.20953330666128e-23
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
TatIII Ty3-aRH TatIII Ty3-aRH 2703 0.2

clusters with similarity:

Cluster Number of similarity hits
27 3380
79 463
73 22
157 12
293 6
9 1
17 1
31 1
102 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
27 518 0.252
79 347 0.111
293 48 0.0527
4 19 0.00462
17 13 0.00202
31 13 0.00229
102 8 0.00261
29 7 0.00277
53 7 0.00196
6 6 0.00134
1 5 0.00119
2 5 0.000802
3 5 0.00116
9 5 0.0015
51 5 0.0014
130 5 0.0018
8 4 0.00172
26 4 0.00143
52 4 0.00156
55 4 0.000904
245 4 0.0029
8640 4 0.00508
5 3 0.0013
10 3 0.00142
19 3 0.00115
23 3 0.000982
24 3 0.000798
33 3 0.00146
35 3 0.000765
41 3 0.000818
50 3 0.00127
61 3 0.00127
98 3 0.00182
106 3 0.0014
113 3 0.00147
134 3 0.00149
156 3 0.00187
157 3 0.00195
179 3 0.00218
2140 3 0.00377
15 2 0.000649
16 2 0.000616
20 2 0.000484
21 2 0.000658
39 2 0.000918
45 2 0.000594
56 2 0.00199
63 2 0.000542
67 2 0.000696
73 2 0.00125
80 2 0.000956
83 2 0.00103
89 2 0.00097
93 2 0.0013
97 2 0.000868
107 2 0.00136
110 2 0.00123
115 2 0.000802
126 2 0.00106
143 2 0.00103
145 2 0.000924
148 2 0.00111
152 2 0.000803
163 2 0.000981
171 2 0.00124
182 2 0.00129
190 2 0.00131
228 2 0.00197
136000 2 0.00255
144000 2 0.00255
165000 2 0.00255
240000 2 0.00255
255000 2 0.00255
7 1 0.000192
11 1 0.000236
12 1 0.000211
13 1 0.000455
14 1 0.000247
22 1 0.000292
25 1 0.000391
28 1 0.000463
30 1 0.000232
32 1 0.000452
34 1 0.000325
36 1 0.000439
40 1 0.000235
46 1 0.000434
47 1 0.000313
49 1 0.000413
54 1 0.000572
57 1 0.000561
60 1 0.00055
62 1 0.000295
66 1 0.000284
69 1 0.000554
70 1 0.000619
72 1 0.000497
74 1 0.000456
76 1 0.000479
78 1 0.00031
82 1 0.000576
84 1 0.000436
87 1 0.000486
88 1 0.000329
94 1 0.000928
95 1 0.000585
96 1 0.000571
99 1 0.000693
101 1 0.000442
109 1 0.000685
114 1 0.000714
123 1 0.00056
128 1 0.00068
132 1 0.00066
135 1 0.00058
137 1 0.000588
144 1 0.000783
147 1 0.000298
153 1 0.000487
160 1 0.00062
166 1 0.000691
168 1 0.000523
169 1 0.000667
172 1 0.000519
178 1 0.000805
181 1 0.000659
183 1 0.000649
185 1 0.000641
188 1 0.00112
192 1 0.00112
194 1 0.00104
195 1 0.000873
200 1 0.000621
205 1 0.000711
206 1 0.000812
208 1 0.00085
209 1 0.00102
225 1 0.00102
226 1 0.00101
232 1 0.000853
238 1 0.000939
240 1 0.00116
254 1 0.00109
260 1 0.00102
271 1 0.00113
302 1 0.00112
360 1 0.00111
480 1 0.00124
772 1 0.00126
943 1 0.00125
1980 1 0.00126
2720 1 0.00127
2760 1 0.00126
2900 1 0.00127
3120 1 0.00127
3120 1 0.00127
3270 1 0.00127
3650 1 0.00127
4840 1 0.00127
5100 1 0.00127
8740 1 0.00127
10200 1 0.00127
13000 1 0.00127
14600 1 0.00127
20400 1 0.00127
21000 1 0.00127
21500 1 0.00127
24100 1 0.00127
32100 1 0.00127
33700 1 0.00127
52300 1 0.00127
53000 1 0.00127
53700 1 0.00127
59300 1 0.00127
61200 1 0.00127
63700 1 0.00127
67000 1 0.00127
85000 1 0.00127
124000 1 0.00127
136000 1 0.00127
145000 1 0.00127
155000 1 0.00127
2e+05 1 0.00127
205000 1 0.00127
210000 1 0.00127
211000 1 0.00127
217000 1 0.00127
227000 1 0.00127
243000 1 0.00127
261000 1 0.00127
289000 1 0.00127
305000 1 0.00127
306000 1 0.00127
323000 1 0.00127
325000 1 0.00127
341000 1 0.00127
341000 1 0.00127
350000 1 0.00127

CL108 ----> CL27

image

No. of shared pairs: :518

CL108 ----> CL79

image

No. of shared pairs: :347

CL108 ----> CL293

image

No. of shared pairs: :48

CL108 ----> CL4

image

No. of shared pairs: :19

CL108 ----> CL17

image

No. of shared pairs: :13

CL108 ----> CL31

image

No. of shared pairs: :13