Cluster no. 109

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Cluster is part of supercluster: 53

Cluster characteristics:

size 13259
size_real 13259
ecount 224262
supercluster 53
annotations_summary 5.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-GAG
4.67% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-PROT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.01% Class_II/Subclass_1/TIR/hAT:hAT-TPase
pair_completeness 0.815058179329227
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.011162229429067
satellite_probability 2.82833761501769e-22
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
TatIII Ty3-GAG TatIII Ty3-GAG 664 5.0e-02
TatV Ty3-INT TatV Ty3-INT 1 7.5e-05
TatIII Ty3-PROT TatIII Ty3-PROT 619 4.7e-02
hAT hAT-TPase hAT hAT-TPase 1 7.5e-05

clusters with similarity:

Cluster Number of similarity hits
169 221
42 107
154 43
9 1
84 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
42 118 0.0488
169 113 0.0813
154 56 0.0463
17 11 0.00174
31 11 0.00197
14 7 0.00178
50 6 0.00266
74 6 0.00288
48 5 0.00131
87 5 0.00257
3460 5 0.00733
3760 5 0.00731
9440 5 0.00736
3 4 0.00095
4 4 0.000999
15 4 0.00135
16 4 0.00127
67 4 0.00145
102 4 0.00135
153 4 0.00205
3660 4 0.00588
4980 4 0.00587
6080 4 0.00588
6130 4 0.00589
23000 4 0.0059
39800 4 0.0059
1 3 0.000732
2 3 0.00049
6 3 0.000686
7 3 0.000589
25 3 0.00123
29 3 0.00124
30 3 0.000715
38 3 0.00164
41 3 0.000843
47 3 0.000972
56 3 0.00334
59 3 0.00173
60 3 0.00176
72 3 0.00157
73 3 0.00201
86 3 0.000977
130 3 0.00112
168 3 0.00166
232 3 0.00282
2430 3 0.00439
4030 3 0.0044
11400 3 0.00442
18500 3 0.00442
21900 3 0.00442
39900 3 0.00443
44800 3 0.00443
11 2 0.000485
19 2 0.000801
22 2 0.000604
23 2 0.000679
24 2 0.000548
33 2 0.00103
35 2 0.000524
37 2 0.000541
39 2 0.000966
53 2 0.000576
55 2 0.000463
57 2 0.0012
58 2 0.00135
63 2 0.000558
64 2 0.00131
66 2 0.000587
69 2 0.00118
77 2 0.00105
85 2 0.00102
88 2 0.000683
94 2 0.00206
97 2 0.000911
98 2 0.0013
101 2 0.000928
103 2 0.000762
139 2 0.00114
142 2 0.00135
144 2 0.00171
145 2 0.000973
148 2 0.00118
151 2 0.0013
159 2 0.00137
162 2 0.0011
192 2 0.00254
240 2 0.00266
250 2 0.00241
1060 2 0.00287
2120 2 0.00292
3240 2 0.00294
9890 2 0.00295
15000 2 0.00295
15100 2 0.00295
30500 2 0.00295
31000 2 0.00295
33600 2 0.00295
47300 2 0.00295
77700 2 0.00295
106000 2 0.00296
139000 2 0.00296
143000 2 0.00296
161000 2 0.00296
162000 2 0.00296
175000 2 0.00296
183000 2 0.00296
204000 2 0.00296
254000 2 0.00296
263000 2 0.00296
303000 2 0.00296
317000 2 0.00296
328000 2 0.00296
340000 2 0.00296
5 1 0.000455
8 1 0.000452
9 1 0.000309
10 1 0.000499
12 1 0.000216
18 1 0.00041
20 1 0.000249
21 1 0.000341
27 1 0.000513
28 1 0.000487
34 1 0.000337
40 1 0.000241
44 1 0.000278
49 1 0.000432
51 1 0.000289
61 1 0.000443
75 1 0.000279
76 1 0.000505
78 1 0.000321
81 1 0.00035
84 1 0.000458
89 1 0.000512
90 1 0.000331
91 1 0.000753
92 1 0.000787
93 1 0.000702
96 1 0.000608
100 1 0.000629
105 1 0.000478
107 1 0.000736
108 1 0.000685
111 1 0.000316
115 1 0.000419
116 1 0.000373
117 1 0.000549
118 1 0.000687
121 1 0.000851
126 1 0.000561
128 1 0.000734
129 1 0.000798
131 1 0.00107
132 1 0.000711
134 1 0.000526
135 1 0.000618
140 1 0.000389
141 1 0.000528
143 1 0.000544
156 1 0.000669
158 1 0.000621
164 1 0.00113
170 1 0.000579
171 1 0.000665
174 1 0.000581
177 1 0.000903
179 1 0.000791
180 1 0.00093
182 1 0.000692
183 1 0.000698
188 1 0.00128
202 1 0.00102
211 1 0.00085
214 1 0.00101
215 1 0.00094
216 1 0.00106
217 1 0.000846
225 1 0.00114
233 1 0.00121
234 1 0.0012
241 1 0.00105
242 1 0.000883
245 1 0.000786
252 1 0.00106
262 1 0.00137
268 1 0.00108
274 1 0.00132
279 1 0.0011
281 1 0.00132
307 1 0.00127
313 1 0.00125
320 1 0.0014
347 1 0.00122
358 1 0.00138
368 1 0.00137
380 1 0.0013
413 1 0.00133
432 1 0.00146
504 1 0.00144
508 1 0.00137
1010 1 0.00143
2120 1 0.00146
2890 1 0.00147
2940 1 0.00147
2960 1 0.00146
4680 1 0.00147
5800 1 0.00147
6600 1 0.00147
8040 1 0.00147
8230 1 0.00147
9330 1 0.00147
9640 1 0.00147
10400 1 0.00147
13200 1 0.00147
14900 1 0.00147
18600 1 0.00148
19900 1 0.00148
19900 1 0.00147
20500 1 0.00148
22100 1 0.00148
23600 1 0.00148
26100 1 0.00147
27600 1 0.00147
29300 1 0.00148
30200 1 0.00148
31700 1 0.00148
32100 1 0.00148
32600 1 0.00148
34600 1 0.00148
34800 1 0.00148
41700 1 0.00148
43700 1 0.00148
45700 1 0.00148
46400 1 0.00148
48200 1 0.00148
54900 1 0.00148
54900 1 0.00148
57700 1 0.00148
58700 1 0.00148
64500 1 0.00148
65700 1 0.00148
69100 1 0.00148
71500 1 0.00148
72900 1 0.00148
73100 1 0.00148
73500 1 0.00148
77000 1 0.00148
78000 1 0.00148
79400 1 0.00148
81700 1 0.00148
86900 1 0.00148
87300 1 0.00148
99000 1 0.00148
103000 1 0.00148
107000 1 0.00148
114000 1 0.00148
119000 1 0.00148
119000 1 0.00148
136000 1 0.00148
144000 1 0.00148
146000 1 0.00148
149000 1 0.00148
162000 1 0.00148
172000 1 0.00148
174000 1 0.00148
174000 1 0.00148
190000 1 0.00148
213000 1 0.00148
234000 1 0.00148
268000 1 0.00148
269000 1 0.00148
276000 1 0.00148
296000 1 0.00148
315000 1 0.00148
316000 1 0.00148
321000 1 0.00148
325000 1 0.00148
328000 1 0.00148
335000 1 0.00148
341000 1 0.00148
341000 1 0.00148

CL109 ----> CL42

image

No. of shared pairs: :118

CL109 ----> CL169

image

No. of shared pairs: :113

CL109 ----> CL154

image

No. of shared pairs: :56

CL109 ----> CL17

image

No. of shared pairs: :11

CL109 ----> CL31

image

No. of shared pairs: :11