Cluster no. 110

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Cluster is part of supercluster: 27

Cluster characteristics:

size 13245
size_real 13245
ecount 349533
supercluster 27
annotations_summary 11.19% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-GAG
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-PROT
pair_completeness 0.772855039486013
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0126085315213288
satellite_probability 5.78030605032073e-22
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
TatII Ty3-GAG TatII Ty3-GAG 1482 1.1e-01
TatIII Ty3-PROT TatIII Ty3-PROT 1 7.6e-05

clusters with similarity:

Cluster Number of similarity hits
93 62
85 2
213 2
30 1
44 1
72 1
102 1
151 1
200 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
93 196 0.123
31 14 0.00244
2000 11 0.0128
17 8 0.00123
36 8 0.00341
44 8 0.00212
15 7 0.00223
4 6 0.00144
9 6 0.00176
11 6 0.0014
3030 6 0.00702
5960 6 0.00703
3 5 0.00114
12 5 0.00104
19 5 0.00187
24 5 0.00131
29 5 0.00193
43 5 0.00149
48 5 0.00125
606 5 0.00562
5630 5 0.00587
28 4 0.0018
30 4 0.000916
33 4 0.00189
49 4 0.00161
67 4 0.00136
79 4 0.00125
80 4 0.00185
89 4 0.00188
146 4 0.00255
179 4 0.00278
8760 4 0.0047
9130 4 0.00469
11000 4 0.0047
19900 4 0.0047
2 3 0.000476
5 3 0.00127
6 3 0.00066
7 3 0.00057
8 3 0.00126
18 3 0.00115
22 3 0.000861
32 3 0.00132
42 3 0.00116
54 3 0.00166
61 3 0.00123
66 3 0.000838
68 3 0.00133
74 3 0.00133
85 3 0.0014
91 3 0.002
95 3 0.00169
97 3 0.00127
116 3 0.00105
128 3 0.00195
133 3 0.000847
143 3 0.00149
152 3 0.00117
157 3 0.00187
163 3 0.00143
172 3 0.00151
174 3 0.00158
213 3 0.00157
215 3 0.00243
7190 3 0.00352
11700 3 0.00352
13900 3 0.00353
20200 3 0.00353
24200 3 0.00353
27700 3 0.00353
57400 3 0.00353
61000 3 0.00353
79500 3 0.00353
1 2 0.000468
13 2 0.000885
20 2 0.000477
21 2 0.000645
26 2 0.000701
27 2 0.000942
34 2 0.000636
38 2 0.000997
40 2 0.000463
45 2 0.000583
46 2 0.000845
51 2 0.00055
52 2 0.000761
53 2 0.000549
55 2 0.000445
56 2 0.00187
58 2 0.00121
59 2 0.00105
65 2 0.000954
72 2 0.000962
73 2 0.0012
78 2 0.000608
82 2 0.00111
83 2 0.001
88 2 0.000645
90 2 0.000627
92 2 0.00139
96 2 0.0011
98 2 0.00117
100 2 0.00114
102 2 0.000639
106 2 0.000904
108 2 0.00123
113 2 0.000951
117 2 0.001
122 2 0.000983
125 2 0.00127
126 2 0.00102
130 2 0.000703
134 2 0.000965
135 2 0.00112
141 2 0.000968
148 2 0.00107
150 2 0.00111
156 2 0.0012
159 2 0.00123
178 2 0.00153
185 2 0.00123
195 2 0.00165
196 2 0.00106
205 2 0.00136
208 2 0.00161
245 2 0.00138
259 2 0.00189
347 2 0.00201
4590 2 0.00234
8800 2 0.00235
9910 2 0.00235
12400 2 0.00235
14200 2 0.00235
14200 2 0.00235
16100 2 0.00235
19600 2 0.00235
19800 2 0.00235
30000 2 0.00235
39600 2 0.00235
45800 2 0.00235
46400 2 0.00235
52200 2 0.00235
63000 2 0.00235
66400 2 0.00235
69300 2 0.00235
75900 2 0.00235
76600 2 0.00235
84300 2 0.00235
90600 2 0.00235
99000 2 0.00235
167000 2 0.00235
168000 2 0.00235
186000 2 0.00235
209000 2 0.00235
236000 2 0.00235
274000 2 0.00235
280000 2 0.00235
294000 2 0.00235
331000 2 0.00235
334000 2 0.00235
335000 2 0.00235
10 1 0.00046
14 1 0.000243
23 1 0.000321
25 1 0.000382
35 1 0.000251
39 1 0.000446
41 1 0.000268
47 1 0.000307
50 1 0.000412
60 1 0.000531
62 1 0.00029
63 1 0.000266
64 1 0.000588
69 1 0.000535
75 1 0.000266
84 1 0.000424
94 1 0.000875
99 1 0.000664
101 1 0.00043
105 1 0.000442
118 1 0.000614
120 1 0.000474
121 1 0.000742
127 1 0.000497
136 1 0.000704
138 1 0.00064
142 1 0.000605
145 1 0.000449
149 1 0.000662
151 1 0.000583
153 1 0.000472
158 1 0.000561
161 1 0.000469
162 1 5e-04
164 1 0.000944
166 1 0.000662
169 1 0.00064
171 1 0.000596
176 1 0.000753
177 1 0.000781
180 1 0.000801
181 1 0.000632
187 1 0.000682
188 1 0.00105
191 1 0.000565
194 1 0.000976
200 1 0.000597
202 1 0.000865
206 1 0.000771
210 1 0.001
211 1 0.000741
214 1 0.000863
222 1 0.000825
232 1 0.000808
240 1 0.00108
247 1 0.000748
251 1 0.00098
258 1 0.000731
287 1 0.00108
288 1 0.000915
304 1 0.00113
309 1 0.00112
321 1 0.0011
323 1 0.00109
333 1 0.00105
349 1 0.00107
513 1 0.00116
540 1 0.00116
542 1 0.00114
762 1 0.00114
815 1 0.00114
923 1 0.00115
1020 1 0.00117
1340 1 0.00117
2020 1 0.00117
2790 1 0.00117
3750 1 0.00117
3980 1 0.00117
6440 1 0.00117
7000 1 0.00117
7940 1 0.00118
8720 1 0.00117
9720 1 0.00118
10500 1 0.00118
12600 1 0.00117
14400 1 0.00117
15900 1 0.00118
17500 1 0.00118
18800 1 0.00118
19500 1 0.00118
20000 1 0.00117
21600 1 0.00118
21600 1 0.00118
21600 1 0.00118
25800 1 0.00118
26100 1 0.00118
30100 1 0.00118
30300 1 0.00118
30300 1 0.00118
31800 1 0.00118
34400 1 0.00118
36800 1 0.00118
37700 1 0.00118
38100 1 0.00118
41700 1 0.00118
44700 1 0.00118
47500 1 0.00118
48600 1 0.00118
49000 1 0.00118
51100 1 0.00118
51300 1 0.00118
59400 1 0.00118
60300 1 0.00118
60500 1 0.00118
61000 1 0.00118
64800 1 0.00118
68400 1 0.00118
70900 1 0.00118
71300 1 0.00118
72000 1 0.00118
73700 1 0.00118
73700 1 0.00118
74300 1 0.00118
75100 1 0.00118
75200 1 0.00118
75800 1 0.00118
78100 1 0.00118
78900 1 0.00118
80000 1 0.00118
83900 1 0.00118
84200 1 0.00118
84600 1 0.00118
91000 1 0.00118
92000 1 0.00118
94300 1 0.00118
97600 1 0.00118
99100 1 0.00118
104000 1 0.00118
104000 1 0.00118
106000 1 0.00118
111000 1 0.00118
115000 1 0.00118
119000 1 0.00118
127000 1 0.00118
128000 1 0.00118
129000 1 0.00118
131000 1 0.00118
132000 1 0.00118
136000 1 0.00118
136000 1 0.00118
144000 1 0.00118
150000 1 0.00118
156000 1 0.00118
160000 1 0.00118
162000 1 0.00118
164000 1 0.00118
170000 1 0.00118
176000 1 0.00118
176000 1 0.00118
177000 1 0.00118
180000 1 0.00118
189000 1 0.00118
193000 1 0.00118
193000 1 0.00118
201000 1 0.00118
201000 1 0.00118
201000 1 0.00118
205000 1 0.00118
205000 1 0.00118
223000 1 0.00118
227000 1 0.00118
235000 1 0.00118
241000 1 0.00118
241000 1 0.00118
246000 1 0.00118
252000 1 0.00118
254000 1 0.00118
256000 1 0.00118
259000 1 0.00118
265000 1 0.00118
273000 1 0.00118
274000 1 0.00118
278000 1 0.00118
284000 1 0.00118
286000 1 0.00118
292000 1 0.00118
296000 1 0.00118
299000 1 0.00118
304000 1 0.00118
304000 1 0.00118
308000 1 0.00118
311000 1 0.00118
315000 1 0.00118
318000 1 0.00118
323000 1 0.00118
326000 1 0.00118
341000 1 0.00118
342000 1 0.00118

CL110 ----> CL93

image

No. of shared pairs: :196

CL110 ----> CL31

image

No. of shared pairs: :14

CL110 ----> CL2002

image

No. of shared pairs: :11