Cluster no. 113

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Cluster is part of supercluster: 12

Cluster characteristics:

size 12791
size_real 12791
ecount 4103681
supercluster 12
annotations_summary 13.10% Class_I/LTR/Ty1_copia/Tork:Ty1-RT
8.45% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
4.95% Class_I/LTR/Ty1_copia/Ivana:Ty1-RT
3.87% Class_I/LTR/Ty1_copia/Ikeros:Ty1-RT
2.57% organelle/mitochondria
2.09% Class_I/LTR/Ty1_copia/Tork:Ty1-INT
1.34% Class_I/LTR/Ty1_copia/Bryco:Ty1-RT
0.63% Class_I/LTR/Ty1_copia/Angela:Ty1-RT
0.62% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
0.57% Class_I/LTR/Ty1_copia/TAR:Ty1-RT
0.10% Class_I/LTR/Ty1_copia/SIRE:Ty1-INT
0.02% Class_I/LTR/Ty1_copia/Ty1-outgroup:Ty1-RT
0.01% Class_I/LTR/Ty1_copia/Bianca:Ty1-RT
pair_completeness 0.67202614379085
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00304901884137284
satellite_probability 2.69560262167269e-22
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 329 2.6e-02
SIRE Ty1-INT SIRE Ty1-INT 13 1.0e-03
Tork Ty1-INT Tork Ty1-INT 267 2.1e-02
Ale Ty1-RT Ale Ty1-RT 1081 8.5e-02
Angela Ty1-RT Angela Ty1-RT 81 6.3e-03
Bianca Ty1-RT Bianca Ty1-RT 1 7.8e-05
Bryco Ty1-RT Bryco Ty1-RT 172 1.3e-02
Ikeros Ty1-RT Ikeros Ty1-RT 495 3.9e-02
Ivana Ty1-RT Ivana Ty1-RT 633 4.9e-02
SIRE Ty1-RT SIRE Ty1-RT 79 6.2e-03
TAR Ty1-RT TAR Ty1-RT 73 5.7e-03
Tork Ty1-RT Tork Ty1-RT 1676 1.3e-01
Ty1-outgroup Ty1-RT Ty1-outgroup Ty1-RT 2 1.6e-04

clusters with similarity:

Cluster Number of similarity hits
127 51500
141 24400
17 1
61 1
95 1
99 1
156 1
3360 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
141 1010 0.41
127 851 0.352
31 13 0.00211
17 11 0.00159
4 9 0.00196
22 8 0.00206
24 7 0.00165
76 7 0.00274
98 7 0.00331
130 7 0.00215
3 6 0.00125
14 6 0.00133
163 6 0.00239
9 5 0.00131
23 5 0.00142
84 5 0.00181
1 4 0.000855
2 4 0.000596
10 4 0.00155
15 4 0.00113
16 4 0.00108
50 4 0.00141
85 4 0.00157
86 4 0.0011
95 4 0.00183
102 4 0.00113
134 4 0.00161
153 4 0.00158
6350 4 0.00318
13 3 0.00112
19 3 0.000975
20 3 0.000652
29 3 0.001
43 3 0.000795
47 3 0.000818
48 3 0.000681
57 3 0.00133
74 3 0.00113
78 3 0.000812
106 3 0.00115
108 3 0.00147
125 3 0.00151
170 3 0.0013
179 3 0.00163
197 3 0.00139
18700 3 0.00239
5 2 0.000721
8 2 0.000716
21 2 0.00057
26 2 0.000614
27 2 0.000791
30 2 0.000419
33 2 0.000793
36 2 0.000727
52 2 0.000659
53 2 0.000494
59 2 0.000866
60 2 0.000874
61 2 0.000705
65 2 0.000799
66 2 0.000502
68 2 0.000753
72 2 0.000805
80 2 0.00078
99 2 0.00105
110 2 0.000951
114 2 0.00107
119 2 0.00112
120 2 0.000795
140 2 0.000635
156 2 0.000964
168 2 0.000839
189 2 0.000909
325 2 0.00153
310000 2 0.00159
6 1 0.000202
7 1 0.000176
11 1 0.000213
25 1 0.000331
28 1 0.00038
32 1 0.000373
34 1 0.000282
39 1 0.000377
41 1 0.000242
42 1 0.000334
44 1 0.00024
45 1 0.000261
46 1 0.000361
51 1 0.000247
62 1 0.000259
63 1 0.00024
70 1 0.000479
73 1 0.000483
77 1 0.000404
79 1 0.000278
81 1 0.000291
82 1 0.000453
83 1 0.000415
88 1 0.000285
89 1 0.000395
90 1 0.000278
91 1 0.000524
92 1 0.000541
94 1 0.000646
97 1 0.00036
100 1 0.000461
104 1 0.000486
107 1 0.000516
111 1 0.000267
116 1 0.000307
118 1 0.000491
121 1 0.00057
129 1 0.000546
132 1 0.000504
138 1 0.000508
143 1 0.000413
144 1 0.000572
149 1 0.000522
151 1 0.000471
152 1 0.000338
154 1 0.000559
157 1 0.000497
164 1 0.000683
165 1 0.000414
169 1 0.000508
171 1 0.00048
172 1 0.000417
176 1 0.000577
178 1 0.000584
180 1 0.000605
183 1 0.000497
186 1 0.000399
188 1 0.000735
191 1 0.00046
195 1 0.000619
196 1 0.000437
203 1 0.000557
206 1 0.000587
208 1 0.000607
210 1 0.000713
214 1 0.000639
215 1 0.000609
218 1 0.000686
219 1 0.000645
220 1 0.00061
223 1 0.000633
238 1 0.000651
240 1 0.000751
250 1 0.00071
258 1 0.000564
268 1 0.000664
276 1 0.00061
296 1 0.000764
297 1 0.000728
302 1 0.000735
313 1 0.000726
317 1 0.000768
358 1 0.000768
359 1 0.000782
399 1 0.000783
471 1 0.000763
544 1 0.000779
604 1 0.000777
3340 1 0.000792
3360 1 0.000795
3610 1 0.000794
3720 1 0.000793
5200 1 0.000795
11200 1 0.000795
11600 1 0.000795
12000 1 0.000795
12300 1 0.000795
13500 1 0.000796
15300 1 0.000795
33600 1 0.000796
40300 1 0.000796
41300 1 0.000796
43800 1 0.000796
45400 1 0.000796
51300 1 0.000796
52500 1 0.000796
63100 1 0.000797
66600 1 0.000796
67000 1 0.000796
67000 1 0.000796
69800 1 0.000797
72900 1 0.000797
81400 1 0.000797
104000 1 0.000796
124000 1 0.000796
134000 1 0.000796
137000 1 0.000796
146000 1 0.000796
243000 1 0.000796
346000 1 0.000796

CL113 ----> CL141

image

No. of shared pairs: :1013

CL113 ----> CL127

image

No. of shared pairs: :851

CL113 ----> CL31

image

No. of shared pairs: :13

CL113 ----> CL17

image

No. of shared pairs: :11