Cluster no. 114

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Cluster is part of supercluster: 54

Cluster characteristics:

size 12641
size_real 12641
ecount 608045
supercluster 54
annotations_summary 0.02% organelle/plastid
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
pair_completeness 0.821994811184779
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0277667906020093
satellite_probability 5.61649627181165e-21
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 2 1.6e-04
TatV Ty3-INT TatV Ty3-INT 1 7.9e-05

clusters with similarity:

Cluster Number of similarity hits
147 2
243 2
4 1
17 1
32 1
39 1
134 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
128 12 0.0092
4 10 0.00253
17 9 0.00144
7 8 0.00159
3680 8 0.0128
23 7 0.00242
44 7 0.00198
48 7 0.00186
2 6 0.000989
3 6 0.00144
21 6 0.00209
126 6 0.00348
243 6 0.00497
1 5 0.00124
6 5 0.00116
16 5 0.00162
19 5 0.00205
32 5 0.00245
57 5 0.0031
63 5 0.00142
76 5 0.0026
134 5 0.00271
12900 5 0.00805
9 4 0.00126
18 4 0.00168
20 4 0.00101
22 4 0.00123
34 4 0.00137
45 4 0.00125
47 4 0.00132
50 4 0.00182
55 4 0.000939
60 4 0.00242
66 4 0.00119
74 4 0.00197
95 4 0.00259
98 4 0.0027
99 4 0.00314
130 4 0.00153
213 4 0.00237
9290 4 0.00645
14 3 0.000774
15 3 0.00103
24 3 0.000835
26 3 0.00114
29 3 0.00127
42 3 0.00127
75 3 0.000851
81 3 0.00107
93 3 0.0022
97 3 0.0014
120 3 0.0016
138 3 0.00225
143 3 0.00168
145 3 0.0015
148 3 0.00183
163 3 0.0016
235 3 0.00241
10900 3 0.00483
13900 3 0.00484
76900 3 0.00485
10 2 0.00103
12 2 0.000437
13 2 0.000985
28 2 0.001
31 2 0.000363
36 2 0.000946
37 2 0.000549
40 2 0.00049
43 2 0.000638
49 2 0.000886
51 2 0.000587
52 2 0.000835
53 2 0.000586
54 2 0.00126
61 2 0.00091
64 2 0.00136
73 2 0.00139
77 2 0.00109
84 2 0.000941
85 2 0.00105
86 2 0.000664
87 2 0.00106
89 2 0.00105
90 2 0.000676
92 2 0.00165
101 2 0.000954
103 2 0.000779
107 2 0.00154
111 2 0.000644
113 2 0.00107
116 2 0.000762
119 2 0.00175
123 2 0.00123
142 2 0.00141
144 2 0.0018
149 2 0.00156
150 2 0.00127
153 2 0.00106
154 2 0.00174
167 2 0.00104
171 2 0.00138
172 2 0.00114
174 2 0.0012
178 2 0.00186
179 2 0.00166
185 2 0.00144
186 2 0.00107
198 2 0.00196
245 2 0.00165
313 2 0.0027
1700 2 0.00317
11100 2 0.00323
11700 2 0.00323
12000 2 0.00323
13900 2 0.00322
19300 2 0.00323
22300 2 0.00323
32600 2 0.00323
50500 2 0.00323
81500 2 0.00323
99400 2 0.00323
171000 2 0.00323
205000 2 0.00323
212000 2 0.00323
244000 2 0.00323
280000 2 0.00323
310000 2 0.00323
311000 2 0.00323
5 1 0.000468
8 1 0.000464
11 1 0.000246
27 1 0.000528
35 1 0.000266
38 1 0.000563
39 1 0.000497
46 1 0.000468
59 1 0.000598
62 1 0.00031
67 1 0.00037
68 1 0.000495
69 1 0.000611
70 1 0.00069
71 1 0.000356
78 1 0.000327
79 1 0.000338
80 1 0.000519
82 1 0.000637
83 1 0.000565
88 1 0.000349
96 1 0.000631
100 1 0.000653
102 1 0.000345
104 1 0.000703
105 1 0.000492
106 1 0.000505
108 1 0.000714
121 1 0.000895
125 1 0.000742
127 1 0.000561
129 1 0.000836
132 1 0.000742
135 1 0.000641
136 1 0.00084
137 1 0.000651
139 1 0.000591
140 1 0.000398
146 1 0.000749
151 1 0.000673
152 1 0.00043
156 1 0.000696
157 1 0.000728
159 1 0.000714
160 1 0.000691
161 1 0.000525
164 1 0.00121
165 1 0.000563
170 1 0.000599
173 1 0.000911
175 1 0.00084
176 1 0.000912
177 1 0.000953
181 1 0.00074
183 1 0.000727
184 1 0.000983
189 1 0.00064
191 1 0.00065
196 1 0.000605
200 1 0.000692
206 1 0.000939
212 1 0.00106
215 1 0.000994
218 1 0.00122
226 1 0.00122
228 1 0.00118
232 1 0.000994
238 1 0.00111
242 1 0.00093
256 1 0.00117
260 1 0.00123
274 1 0.00143
275 1 0.00147
281 1 0.00143
284 1 0.00126
288 1 0.00116
290 1 0.00147
355 1 0.00145
363 1 0.00155
371 1 0.00151
446 1 0.00147
467 1 0.00147
475 1 0.00159
551 1 0.00156
712 1 0.00156
754 1 0.00155
1340 1 0.00161
1470 1 0.00158
1490 1 0.00159
1920 1 0.00159
2380 1 0.0016
2820 1 0.00161
2830 1 0.0016
3000 1 0.0016
3100 1 0.00161
3220 1 0.0016
3300 1 0.00161
3850 1 0.00161
4930 1 0.00161
5270 1 0.00161
5450 1 0.00161
5490 1 0.00161
7120 1 0.00161
8230 1 0.00161
9010 1 0.00161
9810 1 0.00161
11000 1 0.00161
16100 1 0.00161
16900 1 0.00162
17100 1 0.00162
17200 1 0.00161
18900 1 0.00162
21900 1 0.00161
22400 1 0.00161
23900 1 0.00161
30600 1 0.00162
31700 1 0.00161
34700 1 0.00162
35000 1 0.00162
37300 1 0.00162
40000 1 0.00161
42200 1 0.00162
43400 1 0.00162
52400 1 0.00162
55500 1 0.00162
60700 1 0.00162
65600 1 0.00162
67500 1 0.00162
71100 1 0.00162
71900 1 0.00162
73300 1 0.00162
75800 1 0.00162
78200 1 0.00162
79300 1 0.00162
82800 1 0.00162
99600 1 0.00162
105000 1 0.00162
120000 1 0.00162
123000 1 0.00162
127000 1 0.00162
127000 1 0.00162
129000 1 0.00162
132000 1 0.00162
141000 1 0.00162
164000 1 0.00162
164000 1 0.00162
165000 1 0.00162
176000 1 0.00162
181000 1 0.00162
196000 1 0.00162
2e+05 1 0.00162
2e+05 1 0.00162
213000 1 0.00162
233000 1 0.00162
240000 1 0.00162
245000 1 0.00162
254000 1 0.00162
255000 1 0.00162
262000 1 0.00162
292000 1 0.00162
301000 1 0.00162
301000 1 0.00162
306000 1 0.00162
323000 1 0.00162
323000 1 0.00162

CL114 ----> CL128

image

No. of shared pairs: :12

CL114 ----> CL4

image

No. of shared pairs: :10