Cluster no. 116

Go back to cluster table

Cluster is part of supercluster: 2

Cluster characteristics:

size 12592
size_real 12592
ecount 9556018
supercluster 2
annotations_summary 62.47% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT
5.92% organelle/mitochondria
0.16% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH
0.06% Class_I/LTR/Ty3_gypsy/chromovirus/chromo-unclass:Ty3-RT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
pair_completeness 0.51674295350518
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0174714104193139
satellite_probability 1.08938065085533e-19
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 745 0.05916
Reina Ty3-RH Reina Ty3-RH 20 0.00159
Reina Ty3-RT Reina Ty3-RT 7866 0.62468
Tekay Ty3-RT Tekay Ty3-RT 3 0.00024
chromo-unclass Ty3-RT chromo-unclass Ty3-RT 8 0.00064

clusters with similarity:

Cluster Number of similarity hits
71 304000
62 250000
88 239
251 4
17 2
67 2
6 1
23 1
30 1
49 1
85 1
121 1
140 1
213 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
71 1820 0.433
62 1580 0.342
88 56 0.0132
17 14 0.00183
23 9 0.0021
24 7 0.0014
48 7 0.00136
2 6 0.000805
7 6 0.000935
19 6 0.00157
31 6 0.000869
37 6 0.00119
102 6 0.0014
52 5 0.00132
75 5 0.00102
4 4 0.00075
14 4 0.00076
40 4 0.000731
68 4 0.00117
98 4 0.00139
119 4 0.00158
3 3 0.000541
6 3 0.000526
16 3 0.000671
22 3 0.000646
29 3 0.000799
30 3 0.000543
50 3 0.000836
81 3 0.000716
85 3 0.00091
87 3 0.000915
91 3 0.00113
110 3 0.00105
130 3 0.00075
140 3 0.000769
191 3 0.00103
1 2 0.000368
11 2 0.000367
13 2 0.000585
15 2 0.000465
20 2 0.000374
25 2 0.00053
27 2 0.00061
33 2 0.000611
36 2 0.000571
38 2 0.000632
49 2 0.000549
58 2 0.000712
60 2 0.000658
66 2 0.000422
69 2 0.000661
78 2 0.00045
80 2 0.000603
82 2 0.000676
84 2 0.000569
92 2 0.000769
111 2 0.000445
114 2 0.000762
115 2 0.000538
121 2 0.000798
128 2 0.000743
138 2 0.000735
152 2 0.000539
153 2 0.00061
176 2 0.000805
179 2 0.000771
213 2 0.000651
233 2 0.000926
245 2 0.000768
278 2 0.000936
4680 2 0.000995
14700 2 0.000996
83900 2 0.000996
8 1 0.000282
9 1 0.000219
12 1 0.000168
18 1 0.000265
21 1 0.000235
32 1 0.000291
35 1 0.000194
47 1 0.000226
51 1 0.000209
53 1 0.000208
54 1 0.000337
55 1 0.000177
56 1 0.000449
61 1 0.000279
63 1 0.000203
65 1 0.000307
67 1 0.000244
74 1 0.000293
79 1 0.00023
83 1 0.000317
86 1 0.000227
90 1 0.00023
93 1 0.000363
94 1 0.000435
95 1 0.000341
99 1 0.000375
101 1 0.000287
106 1 0.000297
107 1 0.000372
109 1 0.000373
113 1 0.000307
118 1 0.000359
120 1 0.000306
122 1 0.000313
124 1 0.000348
126 1 0.000321
131 1 0.000442
133 1 0.000213
134 1 0.00031
142 1 0.000356
144 1 4e-04
146 1 0.000367
148 1 0.00033
149 1 0.000375
151 1 0.000348
154 1 0.000394
159 1 0.000358
161 1 0.000304
166 1 0.000375
168 1 0.000319
170 1 0.000327
173 1 0.000402
182 1 0.00036
189 1 0.000339
197 1 0.000344
198 1 0.000415
200 1 0.000353
225 1 0.000454
229 1 0.000383
234 1 0.000462
237 1 0.000431
246 1 0.000479
251 1 0.000459
262 1 0.000485
266 1 0.000457
268 1 0.000443
274 1 0.000479
282 1 0.000463
290 1 0.000483
302 1 0.000473
520 1 0.000495
708 1 0.000494
815 1 0.000492
1020 1 0.000494
2050 1 0.000496
2270 1 0.000496
2680 1 0.000497
3050 1 0.000497
3300 1 0.000497
4380 1 0.000497
6920 1 0.000497
7150 1 0.000498
8870 1 0.000498
9900 1 0.000497
15600 1 0.000498
16000 1 0.000498
17000 1 0.000498
21200 1 0.000498
21800 1 0.000498
29000 1 0.000498
30400 1 0.000498
32800 1 0.000498
48700 1 0.000498
62700 1 0.000498
63900 1 0.000498
64400 1 0.000498
108000 1 0.000498
144000 1 0.000498
156000 1 0.000498
215000 1 0.000498
245000 1 0.000498
248000 1 0.000498
256000 1 0.000498
273000 1 0.000498
296000 1 0.000498
310000 1 0.000498

CL116 ----> CL71

image

No. of shared pairs: :1818

CL116 ----> CL62

image

No. of shared pairs: :1576

CL116 ----> CL88

image

No. of shared pairs: :56

CL116 ----> CL17

image

No. of shared pairs: :14