Cluster no. 117

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Cluster is part of supercluster: 1

Cluster characteristics:

size 12360
size_real 12360
ecount 377746
supercluster 1
annotations_summary 0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
pair_completeness 0.687372013651877
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00906148867313916
satellite_probability 1.56390811228182e-21
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Tekay Ty3-CHDII Tekay Ty3-CHDII 1 8.1e-05

clusters with similarity:

Cluster Number of similarity hits
35 6060
55 4620
67 986
43 958
74 829
190 43
53 37
42 4
206 4
157 3
96 2
238 1
358 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
43 438 0.12
74 314 0.123
67 255 0.0789
35 93 0.0217
55 72 0.015
42 59 0.0204
157 48 0.0252
206 40 0.0251
197 27 0.0132
17 11 0.00162
31 10 0.00165
53 9 0.00228
4 8 0.00179
16 7 0.00194
33 5 0.00207
1 4 0.000875
22 4 0.00106
48 4 0.000932
49 4 0.00144
63 4 0.000987
66 4 0.00103
69 4 0.00185
92 4 0.0023
98 4 0.00199
169 4 0.00215
190 4 0.00212
3 3 0.000641
9 3 0.00081
14 3 0.000681
50 3 0.0011
72 3 0.00126
79 3 0.000861
84 3 0.00113
85 3 0.00123
87 3 0.00124
156 3 0.00153
213 3 0.00136
524 3 0.00252
546 3 0.00254
25800 3 0.00261
2 2 0.000303
7 2 0.00036
10 2 0.000809
11 2 0.000435
12 2 0.000392
19 2 0.000674
20 2 0.000446
21 2 0.000588
23 2 0.000585
25 2 0.000686
26 2 0.000635
27 2 0.000826
28 2 0.000793
29 2 0.000692
32 2 0.000778
36 2 0.000757
40 2 0.000434
44 2 0.000492
51 2 0.000509
58 2 0.00103
59 2 0.000909
81 2 0.000601
86 2 0.000565
90 2 0.000573
95 2 0.000965
96 2 0.000946
102 2 0.000584
110 2 0.001
118 2 0.00104
127 2 0.000866
139 2 0.000901
143 2 0.000866
163 2 0.000833
164 2 0.00148
179 2 0.00115
182 2 0.00104
191 2 0.000968
202 2 0.00138
211 2 0.00121
245 2 0.00115
265 2 0.00158
666 2 0.00172
39400 2 0.00174
74300 2 0.00174
110000 2 0.00175
237000 2 0.00175
5 1 0.000375
6 1 0.000207
8 1 0.000373
13 1 0.000391
15 1 0.000291
24 1 0.000243
34 1 0.000291
39 1 0.000394
45 1 0.000268
61 1 0.000367
62 1 0.000267
64 1 5e-04
68 1 0.000393
70 1 0.000506
73 1 0.00051
76 1 0.000408
78 1 0.000279
82 1 0.000477
83 1 0.000435
88 1 0.000294
93 1 0.000528
97 1 0.000375
99 1 0.000555
100 1 0.000486
101 1 0.000381
103 1 0.000323
104 1 0.000513
109 1 0.000549
112 1 0.000559
120 1 0.000416
123 1 0.000466
125 1 0.000533
126 1 0.000444
128 1 0.000546
129 1 0.00058
130 1 0.000318
134 1 0.000422
136 1 0.000582
138 1 0.000538
144 1 0.000611
149 1 0.000553
151 1 0.000497
152 1 0.000351
153 1 0.000414
154 1 0.000595
165 1 0.000434
166 1 0.000553
170 1 0.000455
171 1 0.000507
174 1 0.000457
176 1 0.000616
178 1 0.000624
195 1 0.000664
201 1 0.000803
203 1 0.000593
204 1 0.000688
208 1 0.00065
212 1 0.000679
218 1 0.000741
222 1 0.000663
234 1 0.000766
237 1 0.000685
238 1 0.000701
248 1 0.000739
249 1 0.00072
251 1 0.000759
256 1 0.000724
258 1 0.000601
263 1 0.000613
272 1 0.000663
352 1 0.000769
358 1 0.000839
389 1 0.000821
464 1 0.000844
658 1 0.000858
686 1 0.000856
924 1 0.000865
1150 1 0.000861
1250 1 0.000864
1950 1 0.000867
2040 1 0.000866
4150 1 0.000869
4390 1 0.00087
5640 1 0.00087
6330 1 0.00087
7390 1 0.000871
12700 1 0.000871
13700 1 0.000872
15000 1 0.000871
15300 1 0.000871
16200 1 0.000872
16600 1 0.000871
19200 1 0.000872
21000 1 0.000872
24700 1 0.000872
25400 1 0.000871
26000 1 0.000871
29200 1 0.000873
30800 1 0.000873
35200 1 0.000873
37300 1 0.000873
43000 1 0.000872
44000 1 0.000873
47500 1 0.000872
47700 1 0.000872
54500 1 0.000872
54800 1 0.000872
56900 1 0.000873
63800 1 0.000873
67200 1 0.000872
68500 1 0.000873
69100 1 0.000873
73300 1 0.000872
75600 1 0.000873
80200 1 0.000873
91500 1 0.000873
110000 1 0.000873
111000 1 0.000873
111000 1 0.000873
128000 1 0.000873
131000 1 0.000873
140000 1 0.000873
149000 1 0.000873
158000 1 0.000873
178000 1 0.000873
182000 1 0.000873
209000 1 0.000873
215000 1 0.000873
216000 1 0.000873
222000 1 0.000873
224000 1 0.000873
226000 1 0.000873
242000 1 0.000873
253000 1 0.000873
267000 1 0.000873
272000 1 0.000873
280000 1 0.000873
311000 1 0.000873
314000 1 0.000873
317000 1 0.000873
330000 1 0.000873
339000 1 0.000873
341000 1 0.000873

CL117 ----> CL43

image

No. of shared pairs: :438

CL117 ----> CL74

image

No. of shared pairs: :314

CL117 ----> CL67

image

No. of shared pairs: :255

CL117 ----> CL35

image

No. of shared pairs: :93

CL117 ----> CL55

image

No. of shared pairs: :72

CL117 ----> CL42

image

No. of shared pairs: :59

CL117 ----> CL157

image

No. of shared pairs: :48

CL117 ----> CL206

image

No. of shared pairs: :40

CL117 ----> CL197

image

No. of shared pairs: :27

CL117 ----> CL17

image

No. of shared pairs: :11

CL117 ----> CL31

image

No. of shared pairs: :10