Cluster no. 118

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Cluster is part of supercluster: 56

Cluster characteristics:

size 12257
size_real 12257
ecount 111777
supercluster 56
annotations_summary 0.20% Class_I/LTR/Ty1_copia/Gymco-I:Ty1-INT
0.02% organelle/plastid
pair_completeness 0.774062816616008
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0344036697247706
satellite_probability 1.1947154372705e-20
consensus None
TAREAN_annotation Other
orientation_score 0.999225537672696

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 3 0.00024
Gymco-I Ty1-INT Gymco-I Ty1-INT 25 0.00204

clusters with similarity:

Cluster Number of similarity hits
38 106
170 9
216 9
17 1
19 1
256 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
38 135 0.0696
216 66 0.0629
170 46 0.0251
418 12 0.0143
836 11 0.0138
577 9 0.0113
746 8 0.0101
230 7 0.00748
667 7 0.00881
725 7 0.00879
9660 7 0.00892
6 6 0.00134
17 6 0.000934
1120 6 0.00752
1540 6 0.0076
2810 6 0.00763
2630 5 0.00637
2700 5 0.00634
7800 5 0.00638
10700 5 0.00638
14700 5 0.00638
19600 5 0.00638
1 4 0.000951
4 4 0.000973
20 4 0.00097
74 4 0.00183
99 4 0.00278
162 4 0.00207
191 4 0.00235
203 4 0.00303
207 4 0.00386
760 4 0.00499
1560 4 0.00507
2030 4 0.00508
4660 4 0.00511
5610 4 0.0051
6140 4 0.0051
12100 4 0.00511
20600 4 0.00511
16 3 0.000925
22 3 0.000878
31 3 0.000528
35 3 0.000765
64 3 0.00184
65 3 0.00148
98 3 0.00183
166 3 0.00208
198 3 0.00254
343 3 0.00364
534 3 0.00374
1740 3 0.0038
2860 3 0.00383
3640 3 0.00382
6740 3 0.00383
9180 3 0.00383
11900 3 0.00383
12500 3 0.00383
24300 3 0.00383
24600 3 0.00384
32700 3 0.00383
36300 3 0.00383
54500 3 0.00384
56900 3 0.00384
61000 3 0.00384
71000 3 0.00384
74500 3 0.00384
75000 3 0.00384
75900 3 0.00384
2 2 0.000321
3 2 0.000463
7 2 0.000385
11 2 0.000473
18 2 0.000787
26 2 0.000718
40 2 0.000471
46 2 0.00087
50 2 0.000847
58 2 0.00126
63 2 0.000542
67 2 0.000697
72 2 0.000995
75 2 0.000542
76 2 0.000959
79 2 0.000641
81 2 0.000675
106 2 0.000933
117 2 0.00104
123 2 0.00112
132 2 0.00132
133 2 0.000575
149 2 0.00139
152 2 0.000804
159 2 0.00128
176 2 0.00159
213 2 0.00108
215 2 0.00171
1120 2 0.00254
1670 2 0.00254
3110 2 0.00255
4940 2 0.00255
6100 2 0.00255
6590 2 0.00255
10600 2 0.00255
13700 2 0.00255
16700 2 0.00255
17400 2 0.00256
17500 2 0.00256
21300 2 0.00255
29400 2 0.00256
32300 2 0.00256
32400 2 0.00256
34600 2 0.00256
36800 2 0.00256
39200 2 0.00256
42200 2 0.00256
46300 2 0.00256
55800 2 0.00256
75200 2 0.00256
75700 2 0.00256
82600 2 0.00256
91800 2 0.00256
95000 2 0.00256
1e+05 2 0.00256
109000 2 0.00256
112000 2 0.00256
126000 2 0.00256
128000 2 0.00256
129000 2 0.00256
135000 2 0.00256
137000 2 0.00256
193000 2 0.00256
212000 2 0.00256
214000 2 0.00256
265000 2 0.00256
268000 2 0.00256
284000 2 0.00256
309000 2 0.00256
317000 2 0.00256
332000 2 0.00256
343000 2 0.00256
5 1 0.000435
8 1 0.000431
9 1 0.000299
12 1 0.000211
13 1 0.000456
14 1 0.000247
15 1 0.000325
21 1 0.00033
24 1 0.000266
25 1 0.000392
28 1 0.000463
29 1 0.000396
30 1 0.000233
33 1 0.000488
36 1 0.000439
39 1 0.00046
41 1 0.000273
42 1 0.000396
44 1 0.00027
45 1 0.000297
48 1 0.000255
49 1 0.000413
53 1 0.00028
57 1 0.000563
59 1 0.000545
68 1 0.000458
71 1 0.000336
80 1 0.000479
82 1 0.000577
84 1 0.000437
85 1 0.000483
87 1 0.000487
97 1 0.000435
100 1 0.00059
102 1 0.000326
103 1 0.000366
109 1 0.000687
110 1 0.000614
111 1 0.000306
113 1 0.000491
116 1 0.000359
121 1 0.000781
129 1 0.000736
131 1 0.000963
134 1 0.000499
144 1 0.000785
148 1 0.000555
150 1 0.000576
153 1 0.000487
154 1 0.00076
156 1 0.000625
168 1 0.000524
174 1 0.000548
175 1 0.000739
179 1 0.00073
183 1 0.00065
185 1 0.000643
186 1 0.000493
187 1 0.000715
193 1 0.000816
196 1 0.000551
201 1 0.00113
223 1 0.000903
238 1 0.000942
241 1 0.000945
243 1 0.00073
247 1 0.000788
256 1 0.000983
276 1 0.000858
297 1 0.00111
309 1 0.00122
348 1 0.00122
362 1 0.00118
398 1 0.00125
609 1 0.00124
699 1 0.00125
729 1 0.00126
833 1 0.00126
935 1 0.00126
1140 1 0.00125
1220 1 0.00127
1620 1 0.00127
1760 1 0.00127
1780 1 0.00126
1850 1 0.00127
2160 1 0.00126
2490 1 0.00127
2900 1 0.00127
4120 1 0.00127
4210 1 0.00128
4280 1 0.00127
4300 1 0.00127
4310 1 0.00128
4510 1 0.00127
4630 1 0.00127
5390 1 0.00127
6900 1 0.00127
7520 1 0.00127
9650 1 0.00128
10700 1 0.00128
11300 1 0.00128
13600 1 0.00128
14400 1 0.00128
15200 1 0.00128
15500 1 0.00128
15700 1 0.00128
16200 1 0.00128
16200 1 0.00128
16500 1 0.00128
18900 1 0.00128
19000 1 0.00128
20000 1 0.00128
23000 1 0.00128
24700 1 0.00128
25600 1 0.00128
25800 1 0.00128
27700 1 0.00128
28600 1 0.00128
31400 1 0.00128
31900 1 0.00128
32500 1 0.00128
34100 1 0.00128
34500 1 0.00128
35200 1 0.00128
37400 1 0.00128
38200 1 0.00128
39100 1 0.00128
45300 1 0.00128
46800 1 0.00128
47500 1 0.00128
48500 1 0.00128
48800 1 0.00128
48900 1 0.00128
50900 1 0.00128
51000 1 0.00128
51400 1 0.00128
53400 1 0.00128
54200 1 0.00128
54700 1 0.00128
59900 1 0.00128
60700 1 0.00128
60900 1 0.00128
61000 1 0.00128
64600 1 0.00128
64900 1 0.00128
66000 1 0.00128
73500 1 0.00128
73900 1 0.00128
74400 1 0.00128
74600 1 0.00128
75500 1 0.00128
77500 1 0.00128
78000 1 0.00128
78600 1 0.00128
84700 1 0.00128
86700 1 0.00128
88300 1 0.00128
90400 1 0.00128
95100 1 0.00128
116000 1 0.00128
121000 1 0.00128
126000 1 0.00128
134000 1 0.00128
139000 1 0.00128
151000 1 0.00128
154000 1 0.00128
160000 1 0.00128
160000 1 0.00128
162000 1 0.00128
164000 1 0.00128
168000 1 0.00128
173000 1 0.00128
178000 1 0.00128
186000 1 0.00128
188000 1 0.00128
193000 1 0.00128
194000 1 0.00128
194000 1 0.00128
194000 1 0.00128
217000 1 0.00128
220000 1 0.00128
224000 1 0.00128
231000 1 0.00128
240000 1 0.00128
244000 1 0.00128
247000 1 0.00128
247000 1 0.00128
252000 1 0.00128
254000 1 0.00128
255000 1 0.00128
255000 1 0.00128
255000 1 0.00128
264000 1 0.00128
267000 1 0.00128
268000 1 0.00128
272000 1 0.00128
278000 1 0.00128
289000 1 0.00128
289000 1 0.00128
290000 1 0.00128
291000 1 0.00128
296000 1 0.00128
301000 1 0.00128
302000 1 0.00128
303000 1 0.00128
306000 1 0.00128
320000 1 0.00128
324000 1 0.00128
326000 1 0.00128
326000 1 0.00128
333000 1 0.00128
333000 1 0.00128
334000 1 0.00128
340000 1 0.00128

CL118 ----> CL38

image

No. of shared pairs: :135

CL118 ----> CL216

image

No. of shared pairs: :66

CL118 ----> CL170

image

No. of shared pairs: :46

CL118 ----> CL418

image

No. of shared pairs: :12

CL118 ----> CL836

image

No. of shared pairs: :11