Cluster no. 120

Go back to cluster table

Cluster is part of supercluster: 58

Cluster characteristics:

size 11785
size_real 11785
ecount 119833
supercluster 58
annotations_summary 0.04% Class_I/LTR/Ty3_gypsy/chromovirus/chromo-unclass:Ty3-GAG
0.03% organelle/mitochondria
0.03% organelle/plastid
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
pair_completeness 0.64756046414092
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.217856233556819
satellite_probability 2.02904455712058e-12
consensus None
TAREAN_annotation Other
orientation_score 0.999991655331826

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 3 2.5e-04
plastid plastid 3 2.5e-04
chromo-unclass Ty3-GAG chromo-unclass Ty3-GAG 5 4.2e-04
Reina Ty3-INT Reina Ty3-INT 1 8.5e-05

clusters with similarity:

Cluster Number of similarity hits
15 14
14 12
274 10
162 4
40 3
264 3
216 2
3 1
6 1
17 1
46 1
145 1
156 1
226 1
290 1
329 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
15 81 0.0228
264 56 0.0377
274 26 0.0194
470 24 0.0183
825 24 0.0188
570 22 0.0169
14 19 0.0042
162 14 0.00581
558 14 0.0109
329 13 0.0101
2 12 0.00179
7 12 0.00211
889 12 0.00934
17 11 0.00159
220 10 0.00607
6 9 0.00182
1850 9 0.00707
2740 9 0.00708
30 8 0.00167
40 8 0.00169
78 8 0.00216
247 8 0.00457
66 7 0.00175
173 7 0.00402
1180 7 0.0055
1590 7 0.00549
19 6 0.00195
31 6 0.000974
153 6 0.00237
2640 6 0.00474
3420 6 0.00474
4620 6 0.00474
5 5 0.0018
9 5 0.00131
20 5 0.00109
45 5 0.0013
63 5 0.0012
85 5 0.00196
152 5 0.00168
290 5 0.00377
1210 5 0.0039
2880 5 0.00395
1 4 0.000854
4 4 0.000871
21 4 0.00114
24 4 0.000944
28 4 0.00152
36 4 0.00145
41 4 0.000965
48 4 0.000907
51 4 0.000988
81 4 0.00116
89 4 0.00158
122 4 0.00163
134 4 0.00161
156 4 0.00192
213 4 0.00172
216 4 0.00262
245 4 0.00215
304 4 0.00308
339 4 0.00298
2460 4 0.00315
3600 4 0.00315
6210 4 0.00316
13400 4 0.00316
15700 4 0.00316
18100 4 0.00317
12 3 0.000575
25 3 0.00099
33 3 0.00119
42 3 0.000999
44 3 0.000718
47 3 0.000817
50 3 0.00106
54 3 0.00135
72 3 0.0012
80 3 0.00117
99 3 0.00156
114 3 0.0016
130 3 0.000921
138 3 0.00152
150 3 0.00135
185 3 0.00147
200 3 0.00144
577 3 0.00235
805 3 0.00236
4320 3 0.00237
5790 3 0.00237
8940 3 0.00237
17200 3 0.00238
17600 3 0.00238
28600 3 0.00238
39700 3 0.00238
48200 3 0.00238
51300 3 0.00238
63300 3 0.00238
83600 3 0.00238
3 2 0.000417
8 2 0.000715
16 2 0.000537
18 2 0.000662
23 2 0.000566
26 2 0.000613
35 2 0.000455
37 2 0.000467
67 2 0.000597
69 2 0.000877
74 2 0.000749
84 2 0.000722
86 2 0.000547
87 2 0.000789
90 2 0.000555
91 2 0.00105
95 2 0.000914
101 2 0.00073
107 2 0.00103
113 2 0.000795
115 2 0.000673
119 2 0.00112
126 2 0.000845
127 2 0.000825
128 2 0.00103
131 2 0.00132
135 2 0.000908
141 2 0.000807
145 2 0.000757
149 2 0.00104
159 2 0.000978
160 2 0.000957
179 2 0.00108
180 2 0.0012
196 2 0.000871
198 2 0.0012
205 2 0.00106
211 2 0.00114
214 2 0.00127
215 2 0.00121
234 2 0.00141
241 2 0.0013
291 2 0.00139
1240 2 0.00158
1860 2 0.00157
2040 2 0.00157
3490 2 0.00158
4200 2 0.00158
5120 2 0.00158
6290 2 0.00158
8080 2 0.00158
8230 2 0.00158
10400 2 0.00158
10800 2 0.00158
12900 2 0.00158
13600 2 0.00158
13900 2 0.00158
15000 2 0.00158
16200 2 0.00158
17300 2 0.00158
18100 2 0.00159
19500 2 0.00158
21900 2 0.00158
22000 2 0.00158
23900 2 0.00158
28600 2 0.00158
28900 2 0.00158
30400 2 0.00159
35800 2 0.00158
40600 2 0.00158
49400 2 0.00158
54700 2 0.00158
71000 2 0.00158
73400 2 0.00158
75900 2 0.00158
77200 2 0.00158
78700 2 0.00158
80200 2 0.00158
83100 2 0.00158
87300 2 0.00159
106000 2 0.00159
140000 2 0.00159
152000 2 0.00159
154000 2 0.00159
168000 2 0.00159
177000 2 0.00159
181000 2 0.00159
184000 2 0.00159
198000 2 0.00159
205000 2 0.00159
207000 2 0.00159
226000 2 0.00159
229000 2 0.00159
229000 2 0.00159
238000 2 0.00159
245000 2 0.00159
275000 2 0.00159
277000 2 0.00159
279000 2 0.00159
283000 2 0.00159
287000 2 0.00159
290000 2 0.00159
306000 2 0.00159
316000 2 0.00159
321000 2 0.00159
328000 2 0.00159
329000 2 0.00159
337000 2 0.00159
11 1 0.000212
13 1 0.000374
22 1 0.000257
27 1 0.000394
29 1 0.000333
34 1 0.000281
43 1 0.000265
46 1 0.00036
49 1 0.000345
58 1 0.000484
62 1 0.000259
64 1 0.000473
65 1 0.000399
68 1 0.000376
76 1 0.00039
77 1 0.000403
82 1 0.000452
92 1 0.000539
96 1 0.000449
98 1 0.000471
102 1 0.000282
106 1 0.000381
110 1 0.000474
116 1 0.000306
117 1 0.000416
124 1 0.000469
133 1 0.000253
137 1 0.000459
139 1 0.000428
143 1 0.000412
144 1 0.00057
148 1 0.000438
151 1 0.00047
155 1 0.000505
157 1 0.000496
163 1 0.000397
165 1 0.000413
167 1 0.000389
168 1 0.000419
169 1 0.000506
172 1 0.000416
176 1 0.000575
177 1 0.000591
178 1 0.000582
181 1 0.000502
186 1 0.000398
189 1 0.000453
195 1 0.000616
197 1 0.000463
206 1 0.000585
212 1 0.00063
223 1 0.00063
226 1 0.000682
235 1 0.000529
238 1 0.000649
239 1 0.000639
240 1 0.000747
242 1 0.000582
243 1 0.000541
246 1 0.000746
254 1 0.000717
255 1 0.000589
267 1 0.000612
272 1 0.000616
276 1 0.000608
284 1 0.000697
288 1 0.000664
332 1 0.000739
344 1 0.000742
389 1 0.00075
452 1 0.000772
487 1 0.000777
517 1 0.000782
541 1 0.000773
636 1 0.000777
660 1 0.000776
668 1 0.00078
676 1 0.000774
679 1 0.000789
692 1 0.000785
736 1 0.000784
1080 1 0.000781
1100 1 0.000785
1100 1 0.000784
1260 1 0.000785
1300 1 0.000785
1300 1 0.000786
1360 1 0.000785
1540 1 0.000788
1950 1 0.000788
2260 1 0.000788
2290 1 0.00079
3050 1 0.000788
3120 1 0.000791
3180 1 0.000789
3340 1 0.000791
3350 1 0.000789
3840 1 0.000791
4000 1 0.000788
4130 1 0.00079
4820 1 0.000791
5080 1 0.00079
5080 1 0.00079
5520 1 0.000791
5870 1 0.000791
6010 1 0.000791
6350 1 0.000791
6750 1 0.00079
7200 1 0.000791
7890 1 0.000791
8370 1 0.000791
8430 1 0.000791
8720 1 0.000791
8750 1 0.000792
9260 1 0.000792
9340 1 0.000792
9810 1 0.000791
9890 1 0.000791
10300 1 0.000792
11200 1 0.000793
11800 1 0.000792
12000 1 0.000791
12000 1 0.000791
12100 1 0.000791
12300 1 0.000791
12700 1 0.000792
13000 1 0.000791
13400 1 0.000791
13500 1 0.000792
14200 1 0.000792
14200 1 0.000791
15000 1 0.000792
15800 1 0.000792
16100 1 0.000792
16600 1 0.000792
16800 1 0.000792
18900 1 0.000792
19000 1 0.000792
19000 1 0.000791
19100 1 0.000792
19300 1 0.000792
21900 1 0.000792
22000 1 0.000792
22200 1 0.000792
23000 1 0.000792
23200 1 0.000793
23900 1 0.000792
23900 1 0.000792
23900 1 0.000792
23900 1 0.000792
24500 1 0.000792
25900 1 0.000792
26800 1 0.000792
26900 1 0.000792
28300 1 0.000793
28400 1 0.000792
30900 1 0.000792
31300 1 0.000793
31400 1 0.000792
34200 1 0.000793
36000 1 0.000793
37500 1 0.000793
37600 1 0.000793
39300 1 0.000793
39700 1 0.000792
41500 1 0.000792
41700 1 0.000793
42600 1 0.000793
43600 1 0.000793
45600 1 0.000793
46300 1 0.000792
49100 1 0.000793
50200 1 0.000792
52700 1 0.000793
52800 1 0.000792
54000 1 0.000793
54800 1 0.000792
56600 1 0.000792
56700 1 0.000792
58000 1 0.000792
58100 1 0.000793
58600 1 0.000793
59400 1 0.000792
60700 1 0.000792
63100 1 0.000792
63900 1 0.000792
64700 1 0.000792
67700 1 0.000792
69000 1 0.000793
69400 1 0.000793
70600 1 0.000792
70600 1 0.000792
72300 1 0.000792
73900 1 0.000793
74300 1 0.000792
74600 1 0.000792
75400 1 0.000793
76300 1 0.000793
77100 1 0.000793
77500 1 0.000793
78200 1 0.000792
78500 1 0.000792
78800 1 0.000792
80100 1 0.000793
83300 1 0.000793
83700 1 0.000793
84100 1 0.000792
84900 1 0.000793
90300 1 0.000793
90600 1 0.000793
96600 1 0.000793
98900 1 0.000793
99400 1 0.000793
103000 1 0.000793
106000 1 0.000793
106000 1 0.000793
107000 1 0.000793
109000 1 0.000793
110000 1 0.000793
113000 1 0.000793
114000 1 0.000793
114000 1 0.000793
114000 1 0.000793
116000 1 0.000793
119000 1 0.000793
120000 1 0.000793
123000 1 0.000793
126000 1 0.000793
131000 1 0.000793
137000 1 0.000793
139000 1 0.000793
141000 1 0.000793
148000 1 0.000793
150000 1 0.000793
150000 1 0.000793
154000 1 0.000793
156000 1 0.000793
169000 1 0.000793
173000 1 0.000793
179000 1 0.000793
184000 1 0.000793
186000 1 0.000793
191000 1 0.000793
193000 1 0.000793
197000 1 0.000793
203000 1 0.000793
210000 1 0.000793
213000 1 0.000793
214000 1 0.000793
217000 1 0.000793
218000 1 0.000793
224000 1 0.000793
224000 1 0.000793
225000 1 0.000793
236000 1 0.000793
238000 1 0.000793
240000 1 0.000793
246000 1 0.000793
253000 1 0.000793
253000 1 0.000793
253000 1 0.000793
257000 1 0.000793
258000 1 0.000793
261000 1 0.000793
267000 1 0.000793
274000 1 0.000793
277000 1 0.000793
279000 1 0.000793
282000 1 0.000793
283000 1 0.000793
286000 1 0.000793
286000 1 0.000793
291000 1 0.000793
295000 1 0.000793
297000 1 0.000793
298000 1 0.000793
302000 1 0.000793
306000 1 0.000793
308000 1 0.000793
309000 1 0.000793
314000 1 0.000793
315000 1 0.000793
316000 1 0.000793
323000 1 0.000793
323000 1 0.000793
340000 1 0.000793
343000 1 0.000793
348000 1 0.000793
349000 1 0.000793

CL120 ----> CL15

image

No. of shared pairs: :81

CL120 ----> CL264

image

No. of shared pairs: :56

CL120 ----> CL274

image

No. of shared pairs: :26

CL120 ----> CL470

image

No. of shared pairs: :24

CL120 ----> CL825

image

No. of shared pairs: :24

CL120 ----> CL570

image

No. of shared pairs: :22

CL120 ----> CL14

image

No. of shared pairs: :19

CL120 ----> CL162

image

No. of shared pairs: :14

CL120 ----> CL558

image

No. of shared pairs: :14

CL120 ----> CL329

image

No. of shared pairs: :13

CL120 ----> CL2

image

No. of shared pairs: :12

CL120 ----> CL7

image

No. of shared pairs: :12

CL120 ----> CL889

image

No. of shared pairs: :12

CL120 ----> CL17

image

No. of shared pairs: :11

CL120 ----> CL220

image

No. of shared pairs: :10