Cluster no. 121

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Cluster is part of supercluster: 59

Cluster characteristics:

size 11784
size_real 11784
ecount 130742
supercluster 59
annotations_summary 12.75% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT
8.04% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RH
7.73% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT
2.90% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG
1.81% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-PROT
0.14% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
0.07% organelle/mitochondria
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
pair_completeness 0.843554443053817
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000254582484725051
satellite_probability 1.1655040537334e-23
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 8 6.8e-04
Athila Ty3-GAG Athila Ty3-GAG 342 2.9e-02
Athila Ty3-INT Athila Ty3-INT 1503 1.3e-01
TatV Ty3-INT TatV Ty3-INT 1 8.5e-05
Athila Ty3-PROT Athila Ty3-PROT 213 1.8e-02
Athila Ty3-RH Athila Ty3-RH 947 8.0e-02
Tekay Ty3-RH Tekay Ty3-RH 16 1.4e-03
Athila Ty3-RT Athila Ty3-RT 911 7.7e-02

clusters with similarity:

Cluster Number of similarity hits
13 222
28 85
92 18
176 9
239 7
296 3
82 2
4 1
116 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
296 52 0.0937
13 49 0.0256
176 34 0.0347
239 33 0.041
92 9 0.00822
17 8 0.0013
3 7 0.00173
7060 7 0.0139
6 6 0.00143
11 6 0.00152
368 6 0.0108
7750 6 0.0119
11300 6 0.0119
33 5 0.00283
2490 5 0.00984
3620 5 0.00983
21300 5 0.00995
2 4 0.000672
4 4 0.00104
12 4 0.000897
25 4 0.00176
29 4 0.00178
30 4 0.000995
32 4 0.00208
56 4 0.00554
70 4 0.003
91 4 0.00347
7260 4 0.00794
5 3 0.00148
14 3 0.000798
31 3 0.000556
36 3 0.0015
40 3 0.000756
44 3 0.000878
45 3 0.000973
97 3 0.00149
102 3 0.00108
152 3 0.00136
162 3 0.00182
266 3 0.0044
2570 3 0.00592
2680 3 0.00593
6500 3 0.00595
12100 3 0.00598
14100 3 0.00597
28400 3 0.00598
47200 3 0.00598
49900 3 0.00598
73200 3 0.00598
83200 3 0.00598
8 2 0.000981
15 2 0.000715
16 2 0.000675
19 2 0.000862
22 2 0.000638
23 2 0.000722
26 2 0.000799
28 2 0.00106
34 2 0.000716
37 2 0.000568
42 2 0.000892
48 2 0.000548
49 2 0.000935
50 2 0.000961
53 2 0.000607
58 2 0.00153
59 2 0.00129
60 2 0.0013
71 2 0.000743
74 2 0.00105
77 2 0.00116
80 2 0.00111
81 2 0.000746
84 2 0.000996
85 2 0.00112
87 2 0.00113
90 2 0.000703
100 2 0.00141
103 2 0.000817
116 2 0.000798
123 2 0.00133
127 2 0.0012
138 2 0.00165
140 2 0.000834
141 2 0.00116
146 2 0.00164
153 2 0.00113
159 2 0.00156
160 2 0.0015
163 2 0.00114
165 2 0.00121
169 2 0.00165
180 2 0.00222
182 2 0.00157
183 2 0.00159
186 2 0.00114
197 2 0.00143
245 2 0.00182
282 2 0.00306
287 2 0.00345
1840 2 0.00395
12100 2 0.00398
12300 2 0.00397
13800 2 0.00398
15400 2 0.00398
15900 2 0.00399
18500 2 0.00398
28900 2 0.00399
33600 2 0.00399
35700 2 0.00399
40000 2 0.00398
40200 2 0.00398
142000 2 0.00399
246000 2 0.00399
279000 2 0.00399
3e+05 2 0.00399
302000 2 0.00399
1 1 0.000255
7 1 0.000203
20 1 0.00026
24 1 0.000288
35 1 0.000275
38 1 0.000603
41 1 0.000296
46 1 0.000496
47 1 0.000343
62 1 0.000322
63 1 0.000293
66 1 0.000309
67 1 0.000386
68 1 0.000526
72 1 0.000578
73 1 0.000759
76 1 0.000554
82 1 0.000688
83 1 0.000605
88 1 0.000364
95 1 0.000701
96 1 0.000681
98 1 0.000734
101 1 0.000505
107 1 0.000845
109 1 0.000851
110 1 0.000742
111 1 0.000334
112 1 0.000875
113 1 0.00057
114 1 0.000895
118 1 0.000781
129 1 0.000928
130 1 0.000401
139 1 0.000635
145 1 0.000532
150 1 0.000687
155 1 0.00082
156 1 0.000758
158 1 0.000697
164 1 0.00141
167 1 0.000552
168 1 0.000614
171 1 0.000753
181 1 0.000811
193 1 0.00106
194 1 0.00148
201 1 0.00166
205 1 0.000891
209 1 0.00143
217 1 0.000994
224 1 0.00171
226 1 0.00142
227 1 0.00125
229 1 0.000903
242 1 0.00104
250 1 0.00153
254 1 0.00158
257 1 0.00161
274 1 0.00172
283 1 0.00164
307 1 0.00163
335 1 0.00179
346 1 0.00173
350 1 0.00177
376 1 0.00168
403 1 0.00173
424 1 0.00183
660 1 0.00189
719 1 0.00192
788 1 0.00195
796 1 0.00192
850 1 0.00197
1450 1 0.00198
2010 1 0.00198
2140 1 0.00196
2340 1 0.00196
2470 1 0.00198
2570 1 0.00196
3190 1 0.00197
3950 1 0.00198
4640 1 0.00198
4800 1 0.00197
5720 1 0.00198
5980 1 0.00198
9860 1 0.00198
10500 1 0.00199
11200 1 0.00198
12000 1 0.00199
12000 1 0.00199
12300 1 0.00199
12900 1 0.00198
14000 1 0.00199
14000 1 0.00199
15500 1 0.00199
21200 1 0.00199
21700 1 0.00199
22400 1 0.00199
23000 1 0.00199
26100 1 0.00199
30100 1 0.00199
32700 1 0.002
37700 1 0.00199
39900 1 0.002
40600 1 0.00199
46500 1 0.002
53500 1 0.002
54500 1 0.00199
56000 1 0.002
56100 1 0.002
58900 1 0.00199
59500 1 0.002
60700 1 0.00199
62600 1 0.00199
64400 1 0.00199
66400 1 0.002
66900 1 0.00199
68100 1 0.00199
70300 1 0.00199
81100 1 0.00199
85900 1 0.002
98100 1 0.002
101000 1 0.002
101000 1 0.002
107000 1 0.002
118000 1 0.002
128000 1 0.002
146000 1 0.002
152000 1 0.002
178000 1 0.002
179000 1 0.002
193000 1 0.002
212000 1 0.002
212000 1 0.002
214000 1 0.002
225000 1 0.002
227000 1 0.002
233000 1 0.002
245000 1 0.002
247000 1 0.002
261000 1 0.002
262000 1 0.002
265000 1 0.002
270000 1 0.002
292000 1 0.002
301000 1 0.002
301000 1 0.002
304000 1 0.002
307000 1 0.002
314000 1 0.002
319000 1 0.002
331000 1 0.002
337000 1 0.002
339000 1 0.002

CL121 ----> CL296

image

No. of shared pairs: :52

CL121 ----> CL13

image

No. of shared pairs: :49

CL121 ----> CL176

image

No. of shared pairs: :34

CL121 ----> CL239

image

No. of shared pairs: :33