Cluster no. 122

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Cluster is part of supercluster: 41

Cluster characteristics:

size 11584
size_real 11584
ecount 441883
supercluster 41
annotations_summary 1.84% Class_II/Subclass_1/TIR/hAT:hAT-TPase
0.01% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-RT
0.01% organelle/plastid
pair_completeness 0.660074519919748
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0770188545001779
satellite_probability 1.47808420618381e-17
consensus None
TAREAN_annotation Other
orientation_score 0.99839886141256

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 1 8.6e-05
Gymco-II Ty1-RT Gymco-II Ty1-RT 1 8.6e-05
hAT hAT-TPase hAT hAT-TPase 213 1.8e-02

clusters with similarity:

Cluster Number of similarity hits
199 139
212 89
254 52
214 7
7 4
404 4
11 2
30 2
6 1
17 1
24 1
134 1
161 1
178 1
200 1
238 1
276 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
212 156 0.103
199 127 0.0876
214 52 0.0347
51 28 0.00705
30 26 0.00553
254 25 0.0189
2 23 0.00347
7 20 0.00357
78 20 0.00551
11 18 0.00388
25 17 0.00575
68 17 0.00657
143 16 0.00681
81 14 0.00416
200 14 0.00695
276 13 0.00828
119 12 0.007
6 10 0.00205
17 8 0.00117
137 8 0.0038
1670 8 0.00668
9 7 0.00187
165 7 0.00299
1310 7 0.00585
3640 6 0.00503
249 5 0.0035
3030 5 0.00419
4200 5 0.0042
4220 5 0.0042
4770 5 0.00419
5600 5 0.0042
16 4 0.0011
26 4 0.00125
85 4 0.00162
120 4 0.00163
151 4 0.00195
159 4 0.00203
161 4 0.00162
1550 4 0.00333
2380 4 0.00335
3460 4 0.00336
7740 4 0.00336
14 3 0.000675
15 3 0.000861
31 3 0.000493
36 3 0.00112
38 3 0.00128
42 3 0.00102
73 3 0.0015
74 3 0.00116
77 3 0.00125
90 3 0.00085
91 3 0.00163
153 3 0.00122
155 3 0.00157
178 3 0.00182
189 3 0.00141
242 3 0.00183
295 3 0.00222
304 3 0.00245
902 3 0.00251
1370 3 0.00251
6870 3 0.00252
9140 3 0.00252
10000 3 0.00252
14000 3 0.00252
14700 3 0.00252
18000 3 0.00253
26900 3 0.00252
49100 3 0.00253
3 2 0.000424
10 2 0.000796
12 2 0.000389
22 2 0.000523
24 2 0.00048
40 2 0.00043
44 2 0.000488
46 2 0.00074
50 2 0.000723
55 2 0.000414
61 2 0.000723
63 2 0.000488
86 2 0.000559
87 2 0.000813
89 2 0.000812
103 2 0.000638
107 2 0.00107
110 2 0.000983
115 2 0.00069
128 2 0.00107
134 2 0.00083
138 2 0.00105
140 2 0.000649
150 2 0.000933
163 2 0.000819
170 2 0.000894
173 2 0.0012
194 2 0.00147
196 2 9e-04
213 2 0.000888
216 2 0.00138
223 2 0.00132
251 2 0.00147
260 2 0.00145
265 2 0.00153
271 2 0.00156
335 2 0.00161
389 2 0.00159
1780 2 0.00166
5980 2 0.00168
12400 2 0.00168
12800 2 0.00168
13700 2 0.00168
16800 2 0.00168
19600 2 0.00168
20700 2 0.00168
23600 2 0.00168
43100 2 0.00168
45500 2 0.00168
47300 2 0.00168
51000 2 0.00168
78500 2 0.00168
84200 2 0.00168
94200 2 0.00168
103000 2 0.00168
155000 2 0.00168
159000 2 0.00168
211000 2 0.00168
250000 2 0.00168
272000 2 0.00168
278000 2 0.00168
284000 2 0.00168
307000 2 0.00168
4 1 0.000221
8 1 0.000367
13 1 0.000385
18 1 0.000339
19 1 0.000333
20 1 0.000221
21 1 0.000291
28 1 0.00039
29 1 0.000341
32 1 0.000383
34 1 0.000287
35 1 0.000231
37 1 0.000238
41 1 0.000246
45 1 0.000265
47 1 0.000278
48 1 0.000231
49 1 0.000354
53 1 0.000251
54 1 0.000465
56 1 0.00071
64 1 0.00049
66 1 0.000255
69 1 0.000453
70 1 0.000496
71 1 0.000296
72 1 0.000414
79 1 0.000284
83 1 0.000428
84 1 0.000371
88 1 0.000291
93 1 0.000517
94 1 0.000676
97 1 0.00037
101 1 0.000375
102 1 0.000288
106 1 0.000392
116 1 0.000313
123 1 0.000457
126 1 0.000436
129 1 0.000567
130 1 0.000314
131 1 0.000693
132 1 0.000522
133 1 0.000258
135 1 0.00047
139 1 0.000442
142 1 0.000502
149 1 0.000541
152 1 0.000346
158 1 0.000471
162 1 0.000428
166 1 0.000541
169 1 0.000526
177 1 0.000618
179 1 0.000563
181 1 0.000521
184 1 0.000631
185 1 0.00051
202 1 0.00067
209 1 0.000721
211 1 0.000593
220 1 0.000636
222 1 0.000645
224 1 0.000787
235 1 0.000551
238 1 0.000682
239 1 0.000671
269 1 0.000759
270 1 0.000816
290 1 8e-04
305 1 0.000814
326 1 0.00077
334 1 0.000823
336 1 0.000779
345 1 0.000751
352 1 0.000745
372 1 0.000774
427 1 0.000818
491 1 0.000804
494 1 0.000808
529 1 0.000813
644 1 0.000822
706 1 0.000827
713 1 0.000834
715 1 0.000826
791 1 0.000832
811 1 0.00083
818 1 0.000827
875 1 0.000831
969 1 0.000832
1090 1 0.000838
1120 1 0.000839
1210 1 0.000831
1220 1 0.000838
1500 1 0.000837
1620 1 0.000835
1740 1 0.000837
1740 1 0.000834
2160 1 0.000838
2260 1 0.000837
2370 1 0.000839
2400 1 0.000837
2430 1 0.000839
3140 1 0.00084
3300 1 0.000839
4000 1 0.000839
4080 1 0.000839
4130 1 0.000839
4520 1 0.00084
4570 1 0.000839
4580 1 0.000839
4840 1 0.000839
5420 1 0.00084
5450 1 0.000839
5600 1 0.00084
5650 1 0.000841
5860 1 0.000841
6610 1 0.000842
7670 1 0.00084
7700 1 0.000841
8130 1 0.000842
8130 1 0.000841
8740 1 0.00084
9040 1 0.000842
9620 1 0.00084
10400 1 0.000841
10800 1 0.000841
11200 1 0.000841
15300 1 0.000842
17200 1 0.000842
18400 1 0.000842
18500 1 0.000842
18500 1 0.000842
19800 1 0.000842
21100 1 0.000842
21200 1 0.000842
21400 1 0.000843
22700 1 0.000842
23500 1 0.000841
24500 1 0.000843
24700 1 0.000841
26700 1 0.000842
27200 1 0.000841
27700 1 0.000841
28200 1 0.000842
29000 1 0.000842
29800 1 0.000842
31100 1 0.000842
31600 1 0.000842
32400 1 0.000842
36800 1 0.000842
37200 1 0.000842
38100 1 0.000842
40600 1 0.000842
41700 1 0.000842
43100 1 0.000842
43800 1 0.000842
45300 1 0.000842
48700 1 0.000842
49300 1 0.000842
50000 1 0.000842
50000 1 0.000843
51000 1 0.000842
51400 1 0.000842
52000 1 0.000843
52100 1 0.000842
54600 1 0.000842
56100 1 0.000843
56300 1 0.000842
56500 1 0.000842
60900 1 0.000842
61000 1 0.000843
61100 1 0.000842
62000 1 0.000842
63400 1 0.000842
63400 1 0.000843
66100 1 0.000842
69200 1 0.000842
70100 1 0.000842
72800 1 0.000842
76400 1 0.000842
76700 1 0.000842
77100 1 0.000842
79900 1 0.000843
81100 1 0.000842
82400 1 0.000842
82800 1 0.000842
84100 1 0.000842
84100 1 0.000842
98900 1 0.000842
102000 1 0.000842
103000 1 0.000842
106000 1 0.000842
110000 1 0.000842
111000 1 0.000842
113000 1 0.000842
114000 1 0.000842
131000 1 0.000842
139000 1 0.000842
142000 1 0.000842
146000 1 0.000842
148000 1 0.000842
153000 1 0.000842
158000 1 0.000842
159000 1 0.000842
163000 1 0.000842
164000 1 0.000842
167000 1 0.000842
169000 1 0.000842
169000 1 0.000842
172000 1 0.000842
178000 1 0.000842
185000 1 0.000842
189000 1 0.000842
189000 1 0.000842
193000 1 0.000842
193000 1 0.000842
203000 1 0.000842
206000 1 0.000842
207000 1 0.000842
207000 1 0.000842
214000 1 0.000842
220000 1 0.000842
226000 1 0.000842
228000 1 0.000842
229000 1 0.000842
230000 1 0.000842
232000 1 0.000842
234000 1 0.000842
239000 1 0.000842
242000 1 0.000842
243000 1 0.000842
246000 1 0.000842
247000 1 0.000842
248000 1 0.000842
257000 1 0.000842
259000 1 0.000842
261000 1 0.000842
267000 1 0.000842
269000 1 0.000842
269000 1 0.000842
277000 1 0.000842
286000 1 0.000842
294000 1 0.000842
294000 1 0.000842
297000 1 0.000842
301000 1 0.000842
305000 1 0.000842
305000 1 0.000842
308000 1 0.000842
315000 1 0.000842
316000 1 0.000842
318000 1 0.000842
328000 1 0.000842
338000 1 0.000842
346000 1 0.000842
347000 1 0.000842

CL122 ----> CL212

image

No. of shared pairs: :156

CL122 ----> CL199

image

No. of shared pairs: :127

CL122 ----> CL214

image

No. of shared pairs: :52

CL122 ----> CL51

image

No. of shared pairs: :28

CL122 ----> CL30

image

No. of shared pairs: :26

CL122 ----> CL254

image

No. of shared pairs: :25

CL122 ----> CL2

image

No. of shared pairs: :23

CL122 ----> CL7

image

No. of shared pairs: :20

CL122 ----> CL78

image

No. of shared pairs: :20

CL122 ----> CL11

image

No. of shared pairs: :18

CL122 ----> CL25

image

No. of shared pairs: :17

CL122 ----> CL68

image

No. of shared pairs: :17

CL122 ----> CL143

image

No. of shared pairs: :16

CL122 ----> CL81

image

No. of shared pairs: :14

CL122 ----> CL200

image

No. of shared pairs: :14

CL122 ----> CL276

image

No. of shared pairs: :13

CL122 ----> CL119

image

No. of shared pairs: :12

CL122 ----> CL6

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No. of shared pairs: :10