Cluster no. 124

Go back to cluster table

Cluster is part of supercluster: 6

Cluster characteristics:

size 11482
size_real 11482
ecount 251629
supercluster 6
annotations_summary 49.52% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-INT
9.50% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-RH
5.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-INT
1.11% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT
0.37% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.26% organelle/mitochondria
0.04% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH
0.03% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatI:Ty3-INT
pair_completeness 0.73653962492438
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00034837136387389
satellite_probability 8.20691448488047e-23
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 30 0.00261
Athila Ty3-INT Athila Ty3-INT 128 0.01115
TatI Ty3-INT TatI Ty3-INT 3 0.00026
TatII Ty3-INT TatII Ty3-INT 5686 0.49521
TatIV_Ogre Ty3-INT TatIV_Ogre Ty3-INT 576 0.05017
TatV Ty3-INT TatV Ty3-INT 43 0.00374
Reina Ty3-RH Reina Ty3-RH 5 0.00044
TatII Ty3-RH TatII Ty3-RH 1091 0.09502

clusters with similarity:

Cluster Number of similarity hits
10 976
84 489
90 8
5 2
48 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
10 430 0.196
84 417 0.175
90 34 0.0106
378 31 0.0324
70 17 0.00999
3 7 0.00159
1570 6 0.0068
7 5 0.000946
17 5 0.000767
394 5 0.00523
1140 5 0.00567
4 4 0.000952
5 4 0.00167
6 4 0.000876
18 4 0.00152
29 4 0.00153
33 4 0.00187
41 4 0.00107
9000 4 0.00458
9 3 0.000875
14 3 0.000726
20 3 0.000712
23 3 0.000955
37 3 0.000771
40 3 0.000692
51 3 0.00082
130 3 0.00105
21600 3 0.00343
24100 3 0.00343
40300 3 0.00344
11 2 0.000463
25 2 0.000757
31 2 0.000347
39 2 0.000883
42 2 0.000765
50 2 0.000816
77 2 0.000955
88 2 0.000641
96 2 0.00109
98 2 0.00115
101 2 0.000851
102 2 0.000634
133 2 0.000561
135 2 0.0011
151 2 0.00115
163 2 0.000941
211 2 0.00146
213 2 0.00103
6160 2 0.00229
25700 2 0.00229
37900 2 0.00229
39900 2 0.00229
69600 2 0.00229
78800 2 0.00229
79800 2 0.00229
96300 2 0.00229
163000 2 0.00229
261000 2 0.00229
312000 2 0.00229
1 1 0.000233
2 1 0.000158
13 1 0.000438
16 1 3e-04
21 1 0.00032
22 1 0.000285
24 1 0.00026
26 1 0.000348
27 1 0.000466
32 1 0.000435
36 1 0.000422
43 1 0.000295
44 1 0.000264
48 1 0.000249
49 1 0.000398
52 1 0.000377
56 1 0.000915
57 1 0.000535
60 1 0.000525
61 1 0.000408
63 1 0.000265
66 1 0.000277
67 1 0.000338
72 1 0.000476
73 1 0.000592
74 1 0.000439
76 1 0.00046
78 1 0.000302
79 1 0.000311
82 1 0.000548
85 1 0.000463
89 1 0.000465
91 1 0.000656
92 1 0.000682
93 1 0.000617
95 1 0.000556
97 1 0.000418
99 1 0.000654
105 1 0.000437
107 1 0.000644
116 1 0.000348
119 1 0.000715
120 1 0.000469
126 1 0.000505
128 1 0.000642
131 1 0.000886
132 1 0.000624
134 1 0.000477
136 1 0.000693
140 1 0.000361
145 1 0.000444
152 1 0.000388
159 1 0.000604
161 1 0.000464
165 1 0.000493
170 1 0.00052
173 1 0.00074
182 1 0.000609
184 1 0.000787
185 1 0.000608
188 1 0.00102
189 1 0.00055
192 1 0.00102
194 1 0.000955
196 1 0.000525
199 1 0.000881
202 1 0.000849
206 1 0.000758
214 1 0.000846
221 1 0.000904
227 1 0.000854
229 1 0.000676
234 1 0.00097
238 1 0.000868
239 1 0.000851
242 1 0.000753
245 1 0.000681
265 1 0.00101
315 1 0.00107
1120 1 0.00114
1160 1 0.00114
1780 1 0.00114
1780 1 0.00114
4600 1 0.00114
5660 1 0.00114
6520 1 0.00114
6530 1 0.00114
10200 1 0.00114
11200 1 0.00115
14600 1 0.00115
16300 1 0.00115
16700 1 0.00115
16800 1 0.00115
18000 1 0.00114
19700 1 0.00115
25300 1 0.00115
25800 1 0.00115
26600 1 0.00115
29800 1 0.00115
32000 1 0.00115
33100 1 0.00115
39000 1 0.00115
51600 1 0.00115
54100 1 0.00115
55700 1 0.00115
60700 1 0.00115
61600 1 0.00115
71400 1 0.00115
73500 1 0.00115
75800 1 0.00115
84100 1 0.00115
87700 1 0.00115
160000 1 0.00115
162000 1 0.00115
163000 1 0.00115
174000 1 0.00115
197000 1 0.00115
208000 1 0.00115
217000 1 0.00115
218000 1 0.00115
219000 1 0.00115
224000 1 0.00115
233000 1 0.00115
235000 1 0.00115
238000 1 0.00115
240000 1 0.00115
241000 1 0.00115
254000 1 0.00115
265000 1 0.00115
266000 1 0.00115
269000 1 0.00115
272000 1 0.00115
336000 1 0.00115
337000 1 0.00115
340000 1 0.00115
342000 1 0.00115
344000 1 0.00115
346000 1 0.00115

CL124 ----> CL10

image

No. of shared pairs: :430

CL124 ----> CL84

image

No. of shared pairs: :417

CL124 ----> CL90

image

No. of shared pairs: :34

CL124 ----> CL378

image

No. of shared pairs: :31

CL124 ----> CL70

image

No. of shared pairs: :17