Cluster no. 125

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Cluster is part of supercluster: 1

Cluster characteristics:

size 11418
size_real 11418
ecount 1593294
supercluster 1
annotations_summary 15.90% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-PROT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-INT
pair_completeness 0.772981366459627
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00376598353476966
satellite_probability 4.71413703996316e-23
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
TatIII Ty3-INT TatIII Ty3-INT 1 8.8e-05
TatIII Ty3-PROT TatIII Ty3-PROT 1815 1.6e-01

clusters with similarity:

Cluster Number of similarity hits
69 9740
58 8480
43 3
73 1
508 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
69 577 0.329
58 525 0.342
43 16 0.00492
72 6 0.00306
14 5 0.00125
48 5 0.00129
17 4 0.000627
22 4 0.00119
44 4 0.0011
57 4 0.00231
73 4 0.00258
179 4 0.00303
2950 4 0.00539
13 3 0.0014
29 3 0.00121
33 3 0.0015
36 3 0.00135
37 3 0.000799
59 3 0.00168
95 3 0.00181
102 3 0.000996
113 3 0.00151
6 2 0.000452
9 2 0.000608
26 2 0.000731
30 2 0.000471
31 2 0.000355
46 2 0.000889
49 2 0.000844
55 2 0.000457
67 2 0.000709
78 2 0.00063
84 2 0.000893
88 2 0.000671
98 2 0.00126
110 2 0.00127
142 2 0.0013
222 2 0.00183
238 2 0.00198
1 1 0.000241
3 1 0.000234
4 1 0.000246
5 1 0.000444
7 1 0.000194
11 1 0.000239
18 1 0.000401
21 1 0.000335
23 1 0.000333
25 1 4e-04
27 1 0.000499
28 1 0.000474
34 1 0.000331
35 1 0.000258
39 1 0.00047
40 1 0.000238
47 1 0.000318
50 1 0.000433
51 1 0.000284
54 1 0.00059
56 1 0.00105
61 1 0.000432
62 1 3e-04
68 1 0.000469
76 1 0.000491
77 1 0.000512
83 1 0.000531
85 1 0.000495
92 1 0.000754
93 1 0.000676
97 1 0.000444
99 1 0.00072
107 1 0.000707
114 1 0.000742
117 1 0.000533
119 1 0.000794
123 1 0.000577
127 1 0.000528
134 1 0.000511
136 1 0.000767
149 1 0.000718
150 1 0.000593
153 1 5e-04
155 1 0.00069
156 1 0.000645
157 1 0.000672
159 1 0.00066
162 1 0.000532
164 1 0.00106
165 1 0.000529
166 1 0.000717
168 1 0.000538
170 1 0.000561
172 1 0.000533
175 1 0.000767
190 1 0.000678
193 1 0.00085
196 1 0.000566
205 1 0.000739
209 1 0.00107
213 1 0.000556
219 1 0.000973
228 1 0.00104
245 1 0.000753
248 1 0.00106
257 1 0.00117
266 1 0.0011
278 1 0.00116
343 1 0.00129
345 1 0.00114
436 1 0.00134
530 1 0.00127
607 1 0.0013
642 1 0.00134
1120 1 0.00136
1240 1 0.00134
1250 1 0.00136
1270 1 0.00135
1360 1 0.00135
1560 1 0.00136
2900 1 0.00135
3160 1 0.00136
5490 1 0.00136
5540 1 0.00136
7440 1 0.00136
7590 1 0.00136
15400 1 0.00136
29400 1 0.00137
35000 1 0.00137
38600 1 0.00136
45000 1 0.00137
45200 1 0.00137
46200 1 0.00137
47500 1 0.00137
47800 1 0.00137
56000 1 0.00137
67900 1 0.00137
68800 1 0.00137
74400 1 0.00137
97900 1 0.00137
99600 1 0.00137
133000 1 0.00137
147000 1 0.00137
173000 1 0.00137
178000 1 0.00137
207000 1 0.00137
228000 1 0.00137
241000 1 0.00137
271000 1 0.00137
285000 1 0.00137
290000 1 0.00137

CL125 ----> CL69

image

No. of shared pairs: :577

CL125 ----> CL58

image

No. of shared pairs: :525

CL125 ----> CL43

image

No. of shared pairs: :16