Cluster no. 126

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Cluster is part of supercluster: 24

Cluster characteristics:

size 11351
size_real 11351
ecount 1392252
supercluster 24
annotations_summary 31.90% Class_I/LTR/Ty1_copia/Gymco-I:Ty1-RT
20.48% Class_I/LTR/Ty1_copia/Gymco-I:Ty1-RH
2.05% Class_I/LTR/Ty1_copia/Ivana:Ty1-RH
0.55% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-INT
0.50% organelle/mitochondria
0.07% Class_I/LTR/Ty1_copia/TAR:Ty1-RT
0.04% Class_I/LTR/Ty1_copia/Angela:Ty1-RH
0.04% Class_I/LTR/Ty1_copia/Ivana:Ty1-RT
0.02% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
0.01% Class_I/LTR/Ty1_copia/TAR:Ty1-RH
0.01% Class_I/LTR/Ty1_copia/Angela:Ty1-RT
0.01% Class_I/LTR/Ty1_copia/Ikeros:Ty1-RT
pair_completeness 0.673448326699101
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0192053563562682
satellite_probability 2.21380552449873e-20
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 57 5.0e-03
Angela Ty1-RH Angela Ty1-RH 5 4.4e-04
Gymco-I Ty1-RH Gymco-I Ty1-RH 2325 2.0e-01
Ivana Ty1-RH Ivana Ty1-RH 233 2.1e-02
TAR Ty1-RH TAR Ty1-RH 1 8.8e-05
Angela Ty1-RT Angela Ty1-RT 1 8.8e-05
Gymco-I Ty1-RT Gymco-I Ty1-RT 3621 3.2e-01
Ikeros Ty1-RT Ikeros Ty1-RT 1 8.8e-05
Ivana Ty1-RT Ivana Ty1-RT 4 3.5e-04
SIRE Ty1-RT SIRE Ty1-RT 2 1.8e-04
TAR Ty1-RT TAR Ty1-RT 8 7.0e-04
TatIII Ty3-INT TatIII Ty3-INT 62 5.5e-03

clusters with similarity:

Cluster Number of similarity hits
54 7820
181 14
297 12
94 3
162 3
77 2
85 2
24 1
25 1
37 1
75 1
78 1
148 1
152 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
54 400 0.193
20 11 0.00247
78 11 0.0031
17 10 0.00148
1550 10 0.0089
7 9 0.00163
29 9 0.00315
25 8 0.00278
30 8 0.00173
2 7 0.00107
6 7 0.00146
14 7 0.0016
23 7 0.00207
37 7 0.00169
40 7 0.00153
187 7 0.00406
15 6 0.00176
19 6 0.00205
31 6 0.000999
34 6 0.00176
48 6 0.00141
85 6 0.0025
114 6 0.00348
138 6 0.00329
189 6 0.00292
3 5 0.00108
4 5 0.00113
33 5 0.0021
49 5 0.00182
71 5 0.00152
75 5 0.00125
84 5 0.00191
153 5 0.0021
3620 5 0.00449
9 4 0.00109
11 4 0.000878
12 4 0.00079
16 4 0.00112
21 4 0.00119
41 4 0.001
47 4 0.00114
51 4 0.00103
97 4 0.00152
151 4 0.00202
162 4 0.00177
169 4 0.00219
213 4 0.00184
276 4 0.00268
350 4 0.00341
14500 4 0.0036
1 3 0.000662
5 3 0.00114
22 3 0.000801
24 3 0.000735
26 3 0.000964
39 3 0.0012
43 3 0.000827
45 3 0.000813
50 3 0.00112
53 3 0.000769
61 3 0.00112
65 3 0.00127
66 3 0.000781
67 3 0.000939
70 3 0.00155
74 3 0.00119
76 3 0.00124
77 3 0.00129
81 3 0.000912
86 3 0.000857
87 3 0.00126
90 3 0.000869
104 3 0.00157
115 3 0.00106
119 3 0.00183
136 3 0.00179
148 3 0.00141
161 3 0.00125
163 3 0.00127
168 3 0.00134
177 3 0.00195
179 3 0.00177
181 3 0.00163
191 3 0.00148
195 3 0.00204
297 3 0.00245
14400 3 0.0027
17400 3 0.0027
18600 3 0.0027
68100 3 0.00271
8 2 0.000756
13 2 0.000794
18 2 0.000697
27 2 0.000839
28 2 0.000805
35 2 0.000471
38 2 0.000883
57 2 0.00095
60 2 0.000934
62 2 0.000539
63 2 0.000498
72 2 0.000856
73 2 0.00104
79 2 0.00058
82 2 0.00097
93 2 0.00108
95 2 0.000983
101 2 0.000773
103 2 0.000654
106 2 0.000809
107 2 0.00112
108 2 0.00106
110 2 0.00102
120 2 0.000845
123 2 0.000948
132 2 0.00109
139 2 0.000917
141 2 0.00086
144 2 0.00125
149 2 0.00113
150 2 0.000969
152 2 0.00071
154 2 0.00122
158 2 0.000979
160 2 0.00103
171 2 0.00103
173 2 0.00126
175 2 0.00119
178 2 0.00128
186 2 0.000849
192 2 0.00164
193 2 0.00129
200 2 0.00103
211 2 0.00124
237 2 0.00141
241 2 0.00144
243 2 0.00118
247 2 0.00125
249 2 0.00148
267 2 0.00135
281 2 0.00168
337 2 0.00174
346 2 0.00169
1090 2 0.00178
1190 2 0.00178
3420 2 0.0018
7500 2 0.0018
8750 2 0.0018
15100 2 0.0018
15300 2 0.0018
15800 2 0.0018
16700 2 0.0018
17400 2 0.0018
17500 2 0.0018
22700 2 0.0018
29800 2 0.0018
34200 2 0.0018
35000 2 0.0018
55900 2 0.0018
68700 2 0.0018
69300 2 0.0018
69400 2 0.0018
71700 2 0.0018
73000 2 0.0018
90500 2 0.0018
99300 2 0.0018
101000 2 0.0018
115000 2 0.0018
157000 2 0.0018
163000 2 0.0018
184000 2 0.0018
191000 2 0.0018
211000 2 0.0018
229000 2 0.0018
234000 2 0.0018
246000 2 0.0018
295000 2 0.0018
299000 2 0.0018
3e+05 2 0.0018
337000 2 0.0018
10 1 0.000411
36 1 0.000384
42 1 0.000351
44 1 0.000249
46 1 0.000381
52 1 0.000346
55 1 0.000211
58 1 0.000523
59 1 0.000462
64 1 0.00051
68 1 0.000398
69 1 0.00047
88 1 0.000298
89 1 0.000419
92 1 0.000587
96 1 0.000482
98 1 0.000508
99 1 0.000566
100 1 0.000495
102 1 0.000295
109 1 0.000561
116 1 0.000321
117 1 0.000444
122 1 0.000436
124 1 0.000505
127 1 0.00044
128 1 0.000557
129 1 0.000593
130 1 0.000322
131 1 0.000733
137 1 0.000494
140 1 0.000333
156 1 0.000519
159 1 0.000529
164 1 0.000759
170 1 0.000463
172 1 0.000444
180 1 0.000664
182 1 0.000533
199 1 0.000729
201 1 0.000827
212 1 0.000697
217 1 0.00062
223 1 0.000697
224 1 0.000839
230 1 0.000792
235 1 0.000576
240 1 0.000844
242 1 0.000639
245 1 0.000587
250 1 0.000793
251 1 0.000782
252 1 0.000726
255 1 0.000647
257 1 0.000813
262 1 0.000861
263 1 0.000628
269 1 0.000807
272 1 0.00068
287 1 0.000842
289 1 0.000829
291 1 0.000777
302 1 0.000824
324 1 0.000795
349 1 0.000837
352 1 0.000792
357 1 0.000841
470 1 0.000865
472 1 0.000873
474 1 0.000867
477 1 0.000873
480 1 0.000886
564 1 0.000883
574 1 0.000893
643 1 0.000887
670 1 0.000883
807 1 0.000886
1210 1 0.000894
1280 1 0.000895
1540 1 0.000895
1630 1 0.000892
1770 1 0.000896
2450 1 0.000897
2470 1 0.000897
2480 1 0.000898
2560 1 0.000897
2810 1 9e-04
2940 1 0.000898
2960 1 9e-04
3200 1 0.000897
3800 1 0.000897
4240 1 0.000898
4480 1 0.000899
4600 1 0.000898
4850 1 0.000898
5120 1 9e-04
5760 1 0.000899
5880 1 0.000898
5970 1 0.000899
8510 1 9e-04
8820 1 9e-04
8890 1 9e-04
9280 1 0.000901
9450 1 9e-04
9850 1 0.000902
9950 1 0.000901
10800 1 0.000902
10800 1 0.000902
10900 1 0.000901
11900 1 0.000902
12600 1 9e-04
14800 1 0.000903
15900 1 0.000901
18400 1 0.000901
19000 1 0.000901
19000 1 0.000902
19200 1 0.000902
19700 1 0.000901
19700 1 0.000902
20900 1 0.000901
21100 1 0.000903
21500 1 0.000902
22200 1 0.000902
22900 1 0.000901
23400 1 0.000902
24100 1 0.000902
24800 1 0.000902
25000 1 0.000902
29200 1 0.000902
30000 1 0.000902
30400 1 0.000901
33000 1 0.000901
33800 1 0.000902
35500 1 0.000902
36000 1 0.000901
36800 1 0.000901
37000 1 0.000902
37000 1 0.000902
38500 1 0.000901
39700 1 0.000902
40200 1 0.000901
41400 1 0.000902
42800 1 0.000902
43600 1 0.000902
43600 1 0.000901
46100 1 0.000903
48000 1 0.000902
49700 1 0.000903
51800 1 0.000903
52000 1 0.000903
54100 1 0.000903
55100 1 0.000902
58900 1 0.000903
59600 1 0.000903
60500 1 0.000903
61700 1 0.000903
63100 1 0.000902
63800 1 0.000903
64900 1 0.000903
65400 1 0.000903
66500 1 0.000903
67500 1 0.000902
68100 1 0.000902
69300 1 0.000903
70400 1 0.000902
70900 1 0.000902
72100 1 0.000903
73100 1 0.000902
74600 1 0.000903
76700 1 0.000902
78800 1 0.000902
80000 1 0.000903
81000 1 0.000903
81300 1 0.000902
81800 1 0.000903
82100 1 0.000903
82700 1 0.000903
84000 1 0.000903
87700 1 0.000902
102000 1 0.000902
102000 1 0.000902
104000 1 0.000902
105000 1 0.000902
105000 1 0.000902
110000 1 0.000902
128000 1 0.000902
132000 1 0.000902
146000 1 0.000902
152000 1 0.000902
153000 1 0.000902
154000 1 0.000902
163000 1 0.000902
164000 1 0.000902
165000 1 0.000902
165000 1 0.000902
167000 1 0.000902
176000 1 0.000902
179000 1 0.000902
183000 1 0.000902
186000 1 0.000902
187000 1 0.000902
193000 1 0.000902
195000 1 0.000902
197000 1 0.000902
199000 1 0.000902
2e+05 1 0.000902
201000 1 0.000902
203000 1 0.000902
210000 1 0.000902
223000 1 0.000902
225000 1 0.000902
225000 1 0.000902
228000 1 0.000902
230000 1 0.000902
230000 1 0.000902
245000 1 0.000902
245000 1 0.000902
247000 1 0.000902
253000 1 0.000902
256000 1 0.000902
258000 1 0.000902
269000 1 0.000902
273000 1 0.000902
277000 1 0.000902
282000 1 0.000902
282000 1 0.000902
285000 1 0.000902
287000 1 0.000902
289000 1 0.000902
292000 1 0.000902
293000 1 0.000902
295000 1 0.000902
296000 1 0.000902
301000 1 0.000902
327000 1 0.000902
328000 1 0.000902
329000 1 0.000902
329000 1 0.000902
334000 1 0.000902
345000 1 0.000902
346000 1 0.000902
346000 1 0.000902
349000 1 0.000902

CL126 ----> CL54

image

No. of shared pairs: :400

CL126 ----> CL20

image

No. of shared pairs: :11

CL126 ----> CL78

image

No. of shared pairs: :11

CL126 ----> CL17

image

No. of shared pairs: :10

CL126 ----> CL1550

image

No. of shared pairs: :10