Cluster no. 127

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Cluster is part of supercluster: 12

Cluster characteristics:

size 11337
size_real 11337
ecount 3699092
supercluster 12
annotations_summary 38.18% Class_I/LTR/Ty1_copia/Tork:Ty1-RT
2.13% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
2.03% Class_I/LTR/Ty1_copia/Bryco:Ty1-RT
1.86% Class_I/LTR/Ty1_copia/Ikeros:Ty1-RT
1.83% Class_I/LTR/Ty1_copia/Angela:Ty1-RT
1.43% Class_I/LTR/Ty1_copia/TAR:Ty1-RT
1.37% organelle/mitochondria
0.71% Class_I/LTR/Ty1_copia/Ivana:Ty1-RH
0.58% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-RT
0.19% Class_I/LTR/Ty1_copia/Ivana:Ty1-RT
0.03% Class_I/LTR/Ty1_copia/Gymco-I:Ty1-RT
0.03% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
0.02% Class_I/LTR/Ty1_copia/Ty1-outgroup:Ty1-RT
0.02% Class_I/LTR/Ty1_copia/Bryco:Ty1-RH
0.01% Class_I/LINE:LINE-ENDO
0.01% Class_I/LTR/Ty1_copia/Ikeros:Ty1-RH
0.01% Class_I/LINE:LINE-RT
0.01% Class_I/LTR/Ty1_copia/Osser:Ty1-RT
pair_completeness 0.659154105078297
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00370468377877745
satellite_probability 3.15659983381055e-22
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 155 1.4e-02
LINE LINE-ENDO LINE LINE-ENDO 1 8.8e-05
LINE LINE-RT LINE LINE-RT 1 8.8e-05
Bryco Ty1-RH Bryco Ty1-RH 2 1.8e-04
Ikeros Ty1-RH Ikeros Ty1-RH 1 8.8e-05
Ivana Ty1-RH Ivana Ty1-RH 80 7.1e-03
Ale Ty1-RT Ale Ty1-RT 242 2.1e-02
Angela Ty1-RT Angela Ty1-RT 207 1.8e-02
Bryco Ty1-RT Bryco Ty1-RT 230 2.0e-02
Gymco-I Ty1-RT Gymco-I Ty1-RT 3 2.6e-04
Gymco-II Ty1-RT Gymco-II Ty1-RT 66 5.8e-03
Ikeros Ty1-RT Ikeros Ty1-RT 211 1.9e-02
Ivana Ty1-RT Ivana Ty1-RT 22 1.9e-03
Osser Ty1-RT Osser Ty1-RT 1 8.8e-05
SIRE Ty1-RT SIRE Ty1-RT 3 2.6e-04
TAR Ty1-RT TAR Ty1-RT 162 1.4e-02
Tork Ty1-RT Tork Ty1-RT 4328 3.8e-01
Ty1-outgroup Ty1-RT Ty1-outgroup Ty1-RT 2 1.8e-04

clusters with similarity:

Cluster Number of similarity hits
113 51500
168 43500
95 31
257 4
102 2
17 1
31 1
189 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
168 908 0.396
113 851 0.352
130 14 0.00443
9 8 0.00215
17 8 0.00117
31 8 0.00132
33 6 0.00247
6 5 0.00103
7 5 0.000896
40 5 0.00108
102 5 0.00145
3 4 0.000851
4 4 0.00089
15 4 0.00116
48 4 0.000928
66 4 0.00103
98 4 0.00197
134 4 0.00167
141 4 0.00168
2 3 0.000453
11 3 0.00065
16 3 0.000827
23 3 0.000873
29 3 0.00103
35 3 0.000697
36 3 0.00113
46 3 0.00112
49 3 0.00107
55 3 0.000624
59 3 0.00135
67 3 0.000922
85 3 0.00122
86 3 0.000843
205 3 0.00168
1 2 0.000436
18 2 0.000683
21 2 0.000585
22 2 0.000526
26 2 0.000631
30 2 0.000427
37 2 0.000478
38 2 0.000861
63 2 0.000491
72 2 0.000835
76 2 0.00081
81 2 0.000598
88 2 0.000586
95 2 0.000956
99 2 0.0011
107 2 0.00108
117 2 0.000866
120 2 0.000825
121 2 0.0012
153 2 0.000821
170 2 0.000903
173 2 0.00122
179 2 0.00114
182 2 0.00103
245 2 0.00114
288 2 0.00142
449 2 0.00166
107000 2 0.00172
5 1 0.000372
14 1 0.000226
19 1 0.000335
20 1 0.000222
24 1 0.000241
25 1 0.000341
34 1 0.000289
41 1 0.000247
43 1 0.000272
44 1 0.000245
45 1 0.000267
51 1 0.000253
53 1 0.000253
54 1 0.00047
58 1 0.000508
61 1 0.000364
65 1 0.000414
68 1 0.00039
69 1 0.000458
73 1 0.000505
74 1 0.000389
82 1 0.000472
83 1 0.000432
84 1 0.000374
87 1 0.00041
91 1 0.00055
92 1 0.000568
96 1 0.000469
97 1 0.000373
104 1 0.000508
105 1 0.000388
110 1 0.000497
114 1 0.000561
125 1 0.000528
126 1 0.00044
135 1 0.000475
137 1 0.00048
144 1 0.000603
149 1 0.000547
150 1 0.000471
154 1 0.000589
157 1 0.00052
160 1 0.000501
163 1 0.000413
169 1 0.000532
171 1 0.000502
178 1 0.000616
180 1 0.000639
185 1 0.000516
186 1 0.000414
187 1 0.000561
189 1 0.000474
190 1 0.000524
191 1 0.00048
196 1 0.000455
198 1 0.000638
201 1 0.00079
203 1 0.000586
206 1 0.00062
207 1 0.000704
208 1 0.000642
211 1 6e-04
212 1 0.00067
213 1 0.000448
217 1 0.000599
226 1 0.00073
229 1 0.000564
233 1 0.000759
254 1 0.00077
269 1 0.000772
286 1 0.000656
307 1 0.000783
320 1 0.000833
344 1 0.000799
390 1 0.000826
453 1 0.00081
464 1 0.00083
665 1 0.000836
688 1 0.000833
1130 1 0.000846
1420 1 0.000845
2310 1 0.000853
2380 1 0.000853
2400 1 0.000853
3180 1 0.000854
8430 1 0.000858
11100 1 0.000857
13200 1 0.000856
13900 1 0.000857
18700 1 0.000857
20400 1 0.000857
20900 1 0.000857
39400 1 0.000857
41200 1 0.000857
42500 1 0.000857
50900 1 0.000858
55200 1 0.000858
61800 1 0.000858
72900 1 0.000858
80000 1 0.000858
82900 1 0.000858
94300 1 0.000858
105000 1 0.000858
142000 1 0.000858
151000 1 0.000858
151000 1 0.000858
185000 1 0.000858
202000 1 0.000858
202000 1 0.000858
204000 1 0.000858
208000 1 0.000858
211000 1 0.000858
214000 1 0.000858
230000 1 0.000858
273000 1 0.000858
339000 1 0.000858
346000 1 0.000858

CL127 ----> CL168

image

No. of shared pairs: :908

CL127 ----> CL113

image

No. of shared pairs: :851

CL127 ----> CL130

image

No. of shared pairs: :14