Cluster no. 128

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Cluster is part of supercluster: 61

Cluster characteristics:

size 11331
size_real 11331
ecount 708097
supercluster 61
annotations_summary 3.22% Class_I/LINE:LINE-RT
pair_completeness 0.783566818825752
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00141205542317536
satellite_probability 3.89552186042479e-23
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
LINE LINE-RT LINE LINE-RT 365 0.032

clusters with similarity:

Cluster Number of similarity hits
243 33
94 5
354 4
17 2
232 2
13 1
38 1
123 1
207 1
216 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
243 43 0.0337
354 26 0.0332
94 15 0.0153
213 13 0.00741
99 12 0.00892
114 12 0.0092
1100 12 0.017
840 11 0.0157
38 8 0.00433
17 7 0.00111
207 7 0.00742
123 6 0.00355
37 5 0.00135
98 5 0.00323
722 5 0.00704
1 4 0.000973
2 4 0.000652
7 4 0.000784
14 4 0.00101
19 4 0.00159
31 4 0.000716
48 4 0.00104
66 4 0.00117
170 4 0.0023
245 4 0.00312
20400 4 0.00579
4 3 0.000747
33 3 0.00153
49 3 0.00129
50 3 0.00132
61 3 0.00132
74 3 0.00143
80 3 0.0015
84 3 0.00137
96 3 0.00181
102 3 0.00101
110 3 0.00195
119 3 0.00247
130 3 0.00112
153 3 0.00153
156 3 0.00199
158 3 0.00185
168 3 0.00165
181 3 0.00211
234 3 0.00354
8620 3 0.00434
24900 3 0.00435
61900 3 0.00435
3 2 0.000474
6 2 0.000456
15 2 0.00067
18 2 0.000816
22 2 0.000602
23 2 0.000676
26 2 0.000743
27 2 0.00102
30 2 0.000475
34 2 0.000671
36 2 0.000916
42 2 0.000823
43 2 0.000624
46 2 0.000907
75 2 0.000556
76 2 0.001
81 2 0.000697
82 2 0.00122
85 2 0.00101
86 2 0.000649
88 2 0.000681
116 2 0.000743
120 2 0.00103
122 2 0.00107
137 2 0.00125
148 2 0.00117
149 2 0.00148
162 2 0.00109
169 2 0.00143
176 2 0.00171
180 2 0.00184
196 2 0.00116
203 2 0.00163
205 2 0.00153
232 2 0.00186
235 2 0.00152
259 2 0.00224
260 2 0.00227
266 2 0.0023
273 2 0.00179
499 2 0.00286
21200 2 0.0029
30400 2 0.0029
40700 2 0.0029
51200 2 0.0029
53600 2 0.0029
55700 2 0.0029
58200 2 0.0029
74800 2 0.0029
128000 2 0.0029
157000 2 0.0029
194000 2 0.0029
261000 2 0.0029
266000 2 0.0029
280000 2 0.0029
293000 2 0.0029
328000 2 0.0029
5 1 0.000453
8 1 0.000449
10 1 0.000496
13 1 0.000476
16 1 0.000317
20 1 0.000248
21 1 0.00034
24 1 0.000273
25 1 0.000407
28 1 0.000484
29 1 0.000411
39 1 0.00048
40 1 0.000241
45 1 0.000306
52 1 0.000405
54 1 0.000606
56 1 0.0011
59 1 0.000574
65 1 0.000517
67 1 0.00036
69 1 0.000585
70 1 0.000658
71 1 0.000347
72 1 0.000522
77 1 0.000524
78 1 0.00032
79 1 0.00033
87 1 0.00051
91 1 0.000746
95 1 0.00062
103 1 0.000379
105 1 0.000476
106 1 0.000487
108 1 0.00068
109 1 0.000734
117 1 0.000546
124 1 0.000642
126 1 0.000557
134 1 0.000523
135 1 0.000614
141 1 0.000525
143 1 0.00054
144 1 0.000847
145 1 0.000483
147 1 0.000307
151 1 0.000643
152 1 0.000418
154 1 0.000818
155 1 0.000711
157 1 0.000692
159 1 0.00068
161 1 0.000507
164 1 0.00111
166 1 0.00074
173 1 0.000856
177 1 0.000894
183 1 0.000692
184 1 0.00092
191 1 0.000622
194 1 0.00116
206 1 0.000881
209 1 0.00113
215 1 0.000929
216 1 0.00105
218 1 0.00112
219 1 0.00102
225 1 0.00113
226 1 0.00112
247 1 0.00085
249 1 0.00107
252 1 0.00105
257 1 0.00123
261 1 0.00136
274 1 0.0013
287 1 0.0013
290 1 0.00133
291 1 0.00115
294 1 0.00118
299 1 0.00136
318 1 0.00115
328 1 0.00125
336 1 0.00127
408 1 0.00129
411 1 0.00139
464 1 0.00137
503 1 0.0014
512 1 0.00139
588 1 0.00139
699 1 0.00142
715 1 0.00141
863 1 0.00142
1200 1 0.00144
1240 1 0.00143
1390 1 0.00145
1510 1 0.00143
1510 1 0.00143
3040 1 0.00145
3120 1 0.00144
3720 1 0.00145
3990 1 0.00144
4470 1 0.00145
4740 1 0.00145
5860 1 0.00145
7460 1 0.00145
9270 1 0.00145
9920 1 0.00145
10100 1 0.00145
11300 1 0.00145
12200 1 0.00145
14000 1 0.00145
16400 1 0.00145
19900 1 0.00145
22100 1 0.00145
23500 1 0.00145
24400 1 0.00145
25100 1 0.00145
27200 1 0.00145
27600 1 0.00145
28000 1 0.00145
30500 1 0.00145
31300 1 0.00145
32800 1 0.00145
33500 1 0.00145
43200 1 0.00145
44300 1 0.00145
44800 1 0.00145
45000 1 0.00145
45400 1 0.00145
47500 1 0.00145
50200 1 0.00145
50900 1 0.00145
51300 1 0.00145
55200 1 0.00145
56600 1 0.00145
60100 1 0.00145
61900 1 0.00145
62700 1 0.00145
64300 1 0.00145
64800 1 0.00145
66700 1 0.00145
70700 1 0.00145
73700 1 0.00145
77900 1 0.00145
79000 1 0.00145
79100 1 0.00145
83700 1 0.00145
84700 1 0.00145
86800 1 0.00145
88900 1 0.00145
92800 1 0.00145
1e+05 1 0.00145
103000 1 0.00145
112000 1 0.00145
112000 1 0.00145
120000 1 0.00145
144000 1 0.00145
144000 1 0.00145
145000 1 0.00145
167000 1 0.00145
168000 1 0.00145
171000 1 0.00145
178000 1 0.00145
180000 1 0.00145
182000 1 0.00145
182000 1 0.00145
184000 1 0.00145
205000 1 0.00145
209000 1 0.00145
210000 1 0.00145
214000 1 0.00145
216000 1 0.00145
220000 1 0.00145
222000 1 0.00145
227000 1 0.00145
231000 1 0.00145
235000 1 0.00145
236000 1 0.00145
237000 1 0.00145
243000 1 0.00145
254000 1 0.00145
266000 1 0.00145
282000 1 0.00145
288000 1 0.00145
289000 1 0.00145
293000 1 0.00145
3e+05 1 0.00145
331000 1 0.00145
345000 1 0.00145
345000 1 0.00145
349000 1 0.00145

CL128 ----> CL243

image

No. of shared pairs: :43

CL128 ----> CL354

image

No. of shared pairs: :26

CL128 ----> CL94

image

No. of shared pairs: :15

CL128 ----> CL213

image

No. of shared pairs: :13

CL128 ----> CL99

image

No. of shared pairs: :12

CL128 ----> CL114

image

No. of shared pairs: :12

CL128 ----> CL1101

image

No. of shared pairs: :12

CL128 ----> CL840

image

No. of shared pairs: :11