Cluster no. 129

Go back to cluster table

Cluster is part of supercluster: 9

Cluster characteristics:

size 11164
size_real 11164
ecount 561778
supercluster 9
annotations_summary 16.70% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG
pair_completeness 0.812337662337662
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0317090648513078
satellite_probability 6.54841437066171e-21
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Athila Ty3-GAG Athila Ty3-GAG 1864 0.17

clusters with similarity:

Cluster Number of similarity hits
13 2310
29 1060
19 3
15 2
17 1
218 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
13 329 0.165
29 318 0.137
17 8 0.00129
46 7 0.00334
3560 6 0.0102
30 5 0.00122
6380 5 0.00861
15 4 0.00139
102 4 0.0014
14500 4 0.00689
1 3 0.00075
4 3 0.000768
9 3 0.000956
14 3 0.000782
19 3 0.00125
32 3 0.0015
33 3 0.00162
48 3 0.000805
50 3 0.00139
51 3 0.000892
65 3 0.00164
69 3 0.00188
96 3 0.00194
9490 3 0.00517
43500 3 0.00517
58900 3 0.00518
7 2 0.000401
8 2 0.000945
11 2 0.000497
16 2 0.000658
20 2 0.00051
22 2 0.000622
23 2 0.000702
25 2 0.000852
28 2 0.00102
34 2 0.000696
49 2 0.000902
57 2 0.00127
59 2 0.00122
62 2 0.000628
72 2 0.00111
84 2 0.000959
86 2 0.000673
97 2 0.000953
98 2 0.00139
104 2 0.00145
111 2 0.000652
123 2 0.00127
159 2 0.00147
163 2 0.00109
171 2 0.00142
173 2 0.00189
193 2 0.00196
18200 2 0.00345
44500 2 0.00345
55000 2 0.00345
187000 2 0.00345
2e+05 2 0.00345
257000 2 0.00345
2 1 0.000166
3 1 0.000243
6 1 0.000234
12 1 0.00022
18 1 0.000427
21 1 0.000353
24 1 0.000281
35 1 0.000269
39 1 0.000507
40 1 0.000247
41 1 0.000289
44 1 0.000286
45 1 0.000316
47 1 0.000334
54 1 0.000649
56 1 0.00125
58 1 0.000724
67 1 0.000375
71 1 0.000361
73 1 0.000717
76 1 0.000531
78 1 0.000331
81 1 0.000362
83 1 0.000578
89 1 0.000539
92 1 0.000852
99 1 0.000809
101 1 0.000486
103 1 0.000396
107 1 0.000793
109 1 0.000798
113 1 0.000546
114 1 0.000836
115 1 0.000437
117 1 0.00058
118 1 0.000736
119 1 0.000904
121 1 0.000928
122 1 0.000567
126 1 0.000593
132 1 0.000764
138 1 0.000774
141 1 0.000557
144 1 0.000934
145 1 0.00051
147 1 0.000317
148 1 0.000625
154 1 0.000899
157 1 0.000749
160 1 0.00071
167 1 0.00053
168 1 0.000586
169 1 0.000773
170 1 0.000614
174 1 0.000616
176 1 0.000946
179 1 0.000857
194 1 0.00133
195 1 0.00106
198 1 0.00102
201 1 0.00147
206 1 0.000975
210 1 0.00138
227 1 0.00114
239 1 0.00113
240 1 0.00153
245 1 0.000851
257 1 0.00143
258 1 0.000911
263 1 0.000941
271 1 0.00148
273 1 0.000994
358 1 0.0016
428 1 0.0017
556 1 0.00165
685 1 0.00164
765 1 0.00166
791 1 0.00168
1020 1 0.00171
1080 1 0.00167
1420 1 0.0017
2140 1 0.0017
3810 1 0.00171
4470 1 0.00172
4490 1 0.00172
5980 1 0.00172
8870 1 0.00172
9800 1 0.00172
10100 1 0.00172
10200 1 0.00172
10800 1 0.00172
12700 1 0.00172
14200 1 0.00172
14700 1 0.00172
19900 1 0.00172
20200 1 0.00172
22000 1 0.00173
22600 1 0.00173
24100 1 0.00173
24400 1 0.00173
25500 1 0.00172
30200 1 0.00173
31500 1 0.00173
31900 1 0.00172
33900 1 0.00173
36000 1 0.00172
49500 1 0.00173
52600 1 0.00173
58100 1 0.00173
63300 1 0.00173
69600 1 0.00173
75600 1 0.00173
89600 1 0.00173
97800 1 0.00173
130000 1 0.00173
177000 1 0.00173
180000 1 0.00173
185000 1 0.00173
192000 1 0.00173
202000 1 0.00173
214000 1 0.00173
231000 1 0.00173
257000 1 0.00173
266000 1 0.00173
297000 1 0.00173
346000 1 0.00173
349000 1 0.00173

CL129 ----> CL13

image

No. of shared pairs: :329

CL129 ----> CL29

image

No. of shared pairs: :318