Cluster no. 130

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Cluster is part of supercluster: 12

Cluster characteristics:

size 11157
size_real 11157
ecount 3312904
supercluster 12
annotations_summary 0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-RT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-GAG
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
pair_completeness 0.473065751254291
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0879426266248319
satellite_probability 5.87590109508849e-16
consensus None
TAREAN_annotation Other
orientation_score 0.999999698153666

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
TatII Ty3-GAG TatII Ty3-GAG 1 9e-05
Athila Ty3-INT Athila Ty3-INT 1 9e-05
Tekay Ty3-INT Tekay Ty3-INT 1 9e-05
TatIII Ty3-RT TatIII Ty3-RT 1 9e-05

clusters with similarity:

Cluster Number of similarity hits
76 17400
168 2940
49 2
54 2
2 1
7 1
11 1
12 1
17 1
21 1
23 1
28 1
47 1
68 1
71 1
87 1
91 1
105 1
142 1
187 1
383 1
923 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
76 806 0.244
168 689 0.221
7 29 0.00452
17 22 0.00288
44 19 0.00387
24 17 0.00342
47 17 0.00386
26 16 0.004
45 16 0.00349
21 14 0.00329
48 14 0.00272
127 14 0.00443
2 13 0.00175
12 13 0.00218
20 13 0.00243
18 12 0.00319
23 12 0.00281
16 11 0.00247
11 10 0.00184
13 10 0.00293
4 9 0.00169
14 9 0.00171
28 9 0.00267
31 9 0.00131
66 9 0.0019
141 9 0.0028
34 8 0.00186
40 8 0.00146
42 8 0.00214
95 8 0.00274
156 8 0.00284
30 7 0.00127
49 7 0.00193
51 7 0.00146
87 7 0.00214
89 7 0.00214
113 7 0.00215
343 7 0.00343
2370 7 0.0035
6 6 0.00105
10 6 0.00181
22 6 0.0013
25 6 0.00159
35 6 0.00117
63 6 0.00122
67 6 0.00147
75 6 0.00122
90 6 0.00138
115 6 0.00162
134 6 0.00186
152 6 0.00162
185 6 0.00217
3 5 0.000904
9 5 0.0011
32 5 0.00146
36 5 0.00143
37 5 0.000996
43 5 0.00111
50 5 0.0014
71 5 0.00119
88 5 0.00118
106 5 0.00149
108 5 0.0018
148 5 0.00166
167 5 0.00151
172 5 0.00159
213 5 0.00163
1 4 0.000738
15 4 0.000932
93 4 0.00146
98 4 0.0014
103 4 0.00101
105 4 0.00117
112 4 0.00152
114 4 0.00153
119 4 0.00158
133 4 0.000853
136 4 0.00156
138 4 0.00148
139 4 0.0013
159 4 0.00144
161 4 0.00122
163 4 0.00123
178 4 0.00163
181 4 0.00147
196 4 0.00132
211 4 0.0016
239 4 0.00174
8 3 0.000849
19 3 0.000786
39 3 0.000885
41 3 0.000615
53 3 0.000626
54 3 0.00101
62 3 0.000652
68 3 0.000883
74 3 0.000881
78 3 0.000676
80 3 0.000908
81 3 0.000718
86 3 0.000683
102 3 0.000701
109 3 0.00112
116 3 0.00075
120 3 0.000921
124 3 0.00105
128 3 0.00112
131 3 0.00133
140 3 0.000771
142 3 0.00107
144 3 0.00121
145 3 0.000888
147 3 0.000657
154 3 0.00119
158 3 0.00102
162 3 0.000954
171 3 0.00106
174 3 0.000987
187 3 0.00115
191 3 0.00103
269 3 0.00141
302 3 0.00143
6360 3 0.0015
50000 3 0.0015
5 2 0.000569
27 2 0.000612
46 2 0.000569
56 2 0.000902
60 2 0.00066
65 2 0.000617
72 2 0.00062
77 2 0.000622
84 2 0.000571
85 2 0.000609
91 2 0.000755
99 2 0.000754
104 2 0.000714
107 2 0.000747
110 2 0.000703
132 2 0.000734
149 2 0.000753
150 2 0.000678
151 2 0.000698
153 2 0.000612
160 2 0.000708
165 2 0.000634
169 2 0.000738
173 2 0.000808
182 2 0.000723
183 2 0.000726
186 2 0.000616
189 2 0.00068
193 2 0.00082
198 2 0.000834
202 2 0.000869
206 2 0.000818
231 2 0.000917
234 2 0.000928
238 2 0.000879
245 2 0.000772
247 2 0.000805
291 2 0.00092
324 2 0.000932
368 2 0.000976
524 2 0.00098
726 2 0.000998
1050 2 0.000993
8360 2 0.001
9270 2 0.001
58300 2 0.001
85900 2 0.001
101000 2 0.001
112000 2 0.001
201000 2 0.001
216000 2 0.001
276000 2 0.001
326000 2 0.001
334000 2 0.001
29 1 0.000267
33 1 0.000306
38 1 0.000317
55 1 0.000177
59 1 0.000328
64 1 0.000351
69 1 0.000332
70 1 0.000354
73 1 0.000355
82 1 0.000339
96 1 0.000337
111 1 0.000223
117 1 0.000318
121 1 0.000401
122 1 0.000314
126 1 0.000322
137 1 0.000343
143 1 0.000317
155 1 0.000368
166 1 0.000376
170 1 0.000328
177 1 0.000412
190 1 0.000365
195 1 0.000424
197 1 0.000346
199 1 0.000443
200 1 0.000354
204 1 0.000434
205 1 0.000382
207 1 0.000444
214 1 0.000434
218 1 0.000455
219 1 0.000436
220 1 0.00042
222 1 0.000424
223 1 0.000431
227 1 0.000436
228 1 0.000449
229 1 0.000384
230 1 0.000465
232 1 0.000419
240 1 0.000482
241 1 0.00044
246 1 0.000482
255 1 0.000411
266 1 0.000459
267 1 0.000422
272 1 0.000424
273 1 0.000413
274 1 0.000482
276 1 0.00042
281 1 0.000482
282 1 0.000465
284 1 0.000461
286 1 0.000424
288 1 0.000446
293 1 0.000471
301 1 0.000476
339 1 0.000482
344 1 0.00048
345 1 0.000467
370 1 0.00049
382 1 0.000491
383 1 0.000483
386 1 0.000491
400 1 0.000486
409 1 0.000493
420 1 0.000486
423 1 0.000495
458 1 0.000488
475 1 0.000498
488 1 0.000496
491 1 0.000487
495 1 0.000489
518 1 0.000489
547 1 0.000492
556 1 0.000494
622 1 0.000494
634 1 0.000498
649 1 0.000495
654 1 0.000493
693 1 0.000496
721 1 0.000494
744 1 0.000495
754 1 0.000494
762 1 0.000493
769 1 0.000495
817 1 0.000496
838 1 0.000495
853 1 0.000496
919 1 0.000499
922 1 0.000496
923 1 0.000496
987 1 0.000496
1000 1 0.000496
1080 1 0.000496
1150 1 0.000498
1500 1 0.000498
1520 1 0.000498
1550 1 0.000498
1570 1 0.000498
1790 1 0.000498
2420 1 0.000499
2590 1 0.000499
2800 1 0.000499
3030 1 0.000499
3170 1 5e-04
3290 1 0.000499
3350 1 5e-04
3370 1 5e-04
3370 1 0.000499
3590 1 5e-04
4050 1 0.000499
4270 1 5e-04
4280 1 5e-04
4310 1 5e-04
4580 1 5e-04
4610 1 0.000499
4960 1 5e-04
4980 1 5e-04
5010 1 5e-04
5030 1 5e-04
5470 1 5e-04
5910 1 5e-04
6070 1 5e-04
7240 1 5e-04
7370 1 0.000501
7770 1 5e-04
7920 1 5e-04
8150 1 5e-04
8410 1 5e-04
8440 1 0.000501
8570 1 5e-04
8640 1 0.000501
9170 1 0.000501
10100 1 5e-04
10300 1 5e-04
10600 1 0.000501
10700 1 0.000501
11200 1 5e-04
11900 1 5e-04
12600 1 0.000501
13900 1 0.000501
14200 1 0.000501
14600 1 5e-04
14900 1 0.000501
14900 1 0.000501
15200 1 0.000501
15800 1 5e-04
16800 1 0.000501
17400 1 5e-04
18200 1 5e-04
18400 1 0.000501
18700 1 0.000501
18800 1 0.000501
18900 1 5e-04
21100 1 5e-04
21300 1 0.000501
21600 1 0.000501
22900 1 0.000501
24200 1 0.000501
25300 1 0.000501
27300 1 0.000501
27700 1 0.000501
28400 1 0.000501
28500 1 0.000501
30100 1 0.000501
31800 1 0.000501
33400 1 0.000501
36300 1 0.000501
36300 1 0.000501
36600 1 0.000501
37800 1 0.000501
37900 1 0.000501
38000 1 0.000501
39400 1 0.000501
39600 1 0.000501
40000 1 0.000501
40200 1 0.000501
40700 1 0.000501
40700 1 0.000501
45600 1 0.000501
45700 1 0.000501
48600 1 0.000501
51100 1 0.000501
51300 1 0.000501
51500 1 0.000501
52400 1 0.000501
57700 1 0.000501
58500 1 0.000501
58600 1 0.000501
59400 1 0.000501
60700 1 0.000501
63800 1 0.000501
64500 1 0.000501
66300 1 0.000501
66400 1 0.000501
67200 1 0.000501
68000 1 0.000501
68300 1 0.000501
69400 1 0.000501
72800 1 0.000501
72900 1 0.000501
76000 1 0.000501
78200 1 0.000501
79800 1 0.000501
80900 1 0.000501
80900 1 0.000501
81200 1 0.000501
83800 1 0.000501
84700 1 0.000501
104000 1 0.000501
107000 1 0.000501
111000 1 0.000501
112000 1 0.000501
113000 1 0.000501
116000 1 0.000501
121000 1 0.000501
123000 1 0.000501
129000 1 0.000501
133000 1 0.000501
134000 1 0.000501
140000 1 0.000501
141000 1 0.000501
143000 1 0.000501
147000 1 0.000501
148000 1 0.000501
149000 1 0.000501
150000 1 0.000501
155000 1 0.000501
158000 1 0.000501
161000 1 0.000501
167000 1 0.000501
167000 1 0.000501
182000 1 0.000501
186000 1 0.000501
194000 1 0.000501
201000 1 0.000501
206000 1 0.000501
207000 1 0.000501
210000 1 0.000501
212000 1 0.000501
219000 1 0.000501
222000 1 0.000501
236000 1 0.000501
240000 1 0.000501
241000 1 0.000501
250000 1 0.000501
250000 1 0.000501
253000 1 0.000501
258000 1 0.000501
263000 1 0.000501
264000 1 0.000501
265000 1 0.000501
266000 1 0.000501
273000 1 0.000501
276000 1 0.000501
284000 1 0.000501
290000 1 0.000501
296000 1 0.000501
297000 1 0.000501
3e+05 1 0.000501
303000 1 0.000501
303000 1 0.000501
307000 1 0.000501
307000 1 0.000501
310000 1 0.000501
315000 1 0.000501
315000 1 0.000501
320000 1 0.000501
324000 1 0.000501
325000 1 0.000501
327000 1 0.000501
329000 1 0.000501
334000 1 0.000501
336000 1 0.000501
336000 1 0.000501
340000 1 0.000501
344000 1 0.000501

CL130 ----> CL76

image

No. of shared pairs: :806

CL130 ----> CL168

image

No. of shared pairs: :689

CL130 ----> CL7

image

No. of shared pairs: :29

CL130 ----> CL17

image

No. of shared pairs: :22

CL130 ----> CL44

image

No. of shared pairs: :19

CL130 ----> CL24

image

No. of shared pairs: :17

CL130 ----> CL47

image

No. of shared pairs: :17

CL130 ----> CL26

image

No. of shared pairs: :16

CL130 ----> CL45

image

No. of shared pairs: :16

CL130 ----> CL21

image

No. of shared pairs: :14

CL130 ----> CL48

image

No. of shared pairs: :14

CL130 ----> CL127

image

No. of shared pairs: :14

CL130 ----> CL2

image

No. of shared pairs: :13

CL130 ----> CL12

image

No. of shared pairs: :13

CL130 ----> CL20

image

No. of shared pairs: :13

CL130 ----> CL18

image

No. of shared pairs: :12

CL130 ----> CL23

image

No. of shared pairs: :12

CL130 ----> CL16

image

No. of shared pairs: :11

CL130 ----> CL11

image

No. of shared pairs: :10

CL130 ----> CL13

image

No. of shared pairs: :10