Cluster no. 132

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Cluster is part of supercluster: 16

Cluster characteristics:

size 11007
size_real 11007
ecount 2781703
supercluster 16
annotations_summary 24.03% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
19.55% Class_I/LTR/Ty1_copia/Ivana:Ty1-RT
7.27% Class_I/LTR/Ty1_copia/Ivana:Ty1-RH
3.68% Class_I/LTR/Ty1_copia/Bryco:Ty1-RT
2.96% organelle/mitochondria
2.66% Class_I/LTR/Ty1_copia/Tork:Ty1-RT
2.53% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-RT
1.21% Class_I/LTR/Ty1_copia/Ikeros:Ty1-RT
0.98% Class_I/LTR/Ty1_copia/Ale:Ty1-RH
0.97% Class_I/LTR/Ty1_copia/Gymco-I:Ty1-RT
0.88% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
0.79% Class_I/LTR/Ty1_copia/Bryco:Ty1-RH
0.36% Class_I/LTR/Ty1_copia/Alesia:Ty1-RH
0.23% Class_I/LTR/Ty1_copia/TAR:Ty1-RT
0.13% Class_I/LTR/Ty1_copia/Tork:Ty1-RH
0.06% Class_I/LTR/Ty1_copia/Angela:Ty1-RT
0.05% Class_I/LTR/Ty1_copia/Gymco-I:Ty1-RH
0.04% Class_I/LTR/Ty1_copia/Ikeros:Ty1-RH
0.03% Class_I/LTR/Ty1_copia/SIRE:Ty1-RH
0.03% Class_I/LTR/Ty1_copia/Ty1-outgroup:Ty1-RH
0.03% Class_I/LTR/Ty1_copia/Angela:Ty1-RH
0.02% Class_I/LTR/Ty1_copia/TAR:Ty1-RH
0.02% Class_I/LTR/Ty1_copia/Ty1-outgroup:Ty1-RT
0.02% Class_I/LTR/Ty1_copia/Osser:Ty1-RT
0.01% Class_I/LTR/Ty1_copia/Osser:Ty1-RH
0.01% Class_I/LTR/Ty1_copia/Ty1-outgroup:Ty1-INT
pair_completeness 0.765640038498556
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00236213318797129
satellite_probability 4.71413703996316e-23
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 326 3.0e-02
Ty1-outgroup Ty1-INT Ty1-outgroup Ty1-INT 1 9.1e-05
Ale Ty1-RH Ale Ty1-RH 108 9.8e-03
Alesia Ty1-RH Alesia Ty1-RH 40 3.6e-03
Angela Ty1-RH Angela Ty1-RH 3 2.7e-04
Bryco Ty1-RH Bryco Ty1-RH 87 7.9e-03
Gymco-I Ty1-RH Gymco-I Ty1-RH 5 4.5e-04
Ikeros Ty1-RH Ikeros Ty1-RH 4 3.6e-04
Ivana Ty1-RH Ivana Ty1-RH 800 7.3e-02
Osser Ty1-RH Osser Ty1-RH 1 9.1e-05
SIRE Ty1-RH SIRE Ty1-RH 3 2.7e-04
TAR Ty1-RH TAR Ty1-RH 2 1.8e-04
Tork Ty1-RH Tork Ty1-RH 14 1.3e-03
Ty1-outgroup Ty1-RH Ty1-outgroup Ty1-RH 3 2.7e-04
Ale Ty1-RT Ale Ty1-RT 2645 2.4e-01
Angela Ty1-RT Angela Ty1-RT 7 6.4e-04
Bryco Ty1-RT Bryco Ty1-RT 405 3.7e-02
Gymco-I Ty1-RT Gymco-I Ty1-RT 107 9.7e-03
Gymco-II Ty1-RT Gymco-II Ty1-RT 279 2.5e-02
Ikeros Ty1-RT Ikeros Ty1-RT 133 1.2e-02
Ivana Ty1-RT Ivana Ty1-RT 2152 2.0e-01
Osser Ty1-RT Osser Ty1-RT 2 1.8e-04
SIRE Ty1-RT SIRE Ty1-RT 97 8.8e-03
TAR Ty1-RT TAR Ty1-RT 25 2.3e-03
Tork Ty1-RT Tork Ty1-RT 293 2.7e-02
Ty1-outgroup Ty1-RT Ty1-outgroup Ty1-RT 2 1.8e-04

clusters with similarity:

Cluster Number of similarity hits
85 21700
155 14900
6 2
17 2

clusters connected through mates:

Cluster Number of shared
read pairs		 k
155 543 0.375
85 517 0.256
17 11 0.00173
107 7 0.00495
31 6 0.00107
13 5 0.00233
14 5 0.00125
15 5 0.00165
22 5 0.00149
99 5 0.0036
3 4 0.000938
48 4 0.00103
266 4 0.00439
68 3 0.00141
78 3 0.000946
84 3 0.00134
86 3 0.00096
97 3 0.00133
147 3 0.000908
151 3 0.00188
153 3 0.0015
1 2 0.000481
4 2 0.000493
5 2 0.000888
6 2 0.000452
7 2 0.000389
12 2 0.000427
18 2 0.000802
19 2 0.000784
25 2 8e-04
26 2 0.000732
30 2 0.000471
33 2 0.001
35 2 0.000517
37 2 0.000533
44 2 0.000548
46 2 0.000889
50 2 0.000865
55 2 0.000457
57 2 0.00116
59 2 0.00112
63 2 0.00055
67 2 0.000709
69 2 0.00114
71 2 0.000684
72 2 0.00102
118 2 0.00132
126 2 0.00109
130 2 0.000734
139 2 0.00111
144 2 0.00163
156 2 0.00129
160 2 0.00128
166 2 0.00144
173 2 0.00165
174 2 0.00113
213 2 0.00111
238 2 0.00198
264 2 0.00209
2 1 0.000162
8 1 0.000441
9 1 0.000304
10 1 0.000486
11 1 0.000239
20 1 0.000245
23 1 0.000333
24 1 0.00027
28 1 0.000474
29 1 0.000404
34 1 0.000331
40 1 0.000238
49 1 0.000422
52 1 0.000398
53 1 0.000284
54 1 0.00059
56 1 0.00105
58 1 0.000652
60 1 0.000567
61 1 0.000433
64 1 0.000631
66 1 0.000289
74 1 0.000467
76 1 0.000492
79 1 0.000326
80 1 0.00049
89 1 0.000498
92 1 0.000754
95 1 0.000604
98 1 0.000628
101 1 0.000453
102 1 0.000332
108 1 0.00066
109 1 0.000711
113 1 0.000504
114 1 0.000742
115 1 0.00041
122 1 0.000522
123 1 0.000577
124 1 0.000624
129 1 0.000764
138 1 0.000692
148 1 0.000571
152 1 0.00041
157 1 0.000672
159 1 0.00066
161 1 0.000496
163 1 0.000504
171 1 0.000641
172 1 0.000534
175 1 0.000767
176 1 0.000826
178 1 0.000841
179 1 0.000758
180 1 0.000885
181 1 0.000683
188 1 0.0012
189 1 0.000596
198 1 0.000883
200 1 0.000642
207 1 0.00101
211 1 0.000812
214 1 0.000961
215 1 0.000894
228 1 0.00104
230 1 0.00113
233 1 0.00113
235 1 0.000735
236 1 0.00128
237 1 0.000957
249 1 0.00103
257 1 0.00117
271 1 0.0012
276 1 0.000897
288 1 0.00103
303 1 0.0012
325 1 0.00128
339 1 0.00123
349 1 0.00122
390 1 0.00129
641 1 0.00131
695 1 0.00132
720 1 0.00135
754 1 0.00132
845 1 0.00133
1640 1 0.00134
3490 1 0.00136
4710 1 0.00136
6300 1 0.00136
6440 1 0.00136
6620 1 0.00136
7020 1 0.00136
12000 1 0.00136
14400 1 0.00136
15600 1 0.00136
27200 1 0.00137
34800 1 0.00137
37500 1 0.00137
42200 1 0.00137
44400 1 0.00137
49400 1 0.00137
53900 1 0.00137
66500 1 0.00137
72900 1 0.00137
74100 1 0.00137
108000 1 0.00137
115000 1 0.00137
118000 1 0.00137
127000 1 0.00137
151000 1 0.00137
196000 1 0.00137
231000 1 0.00137
242000 1 0.00137
316000 1 0.00137
334000 1 0.00137

CL132 ----> CL155

image

No. of shared pairs: :543

CL132 ----> CL85

image

No. of shared pairs: :517

CL132 ----> CL17

image

No. of shared pairs: :11