Cluster no. 133

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Cluster is part of supercluster: 2

Cluster characteristics:

size 10884
size_real 10884
ecount 6721139
supercluster 2
annotations_summary 71.50% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-CHDII
0.39% Class_I/LTR/Ty3_gypsy/chromovirus/chromo-unclass:Ty3-CHDII
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT
0.01% organelle/plastid
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
pair_completeness 0.337593707754701
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0123116501286292
satellite_probability 1.17646958017996e-20
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 1 9.2e-05
Reina Ty3-CHDII Reina Ty3-CHDII 7782 7.1e-01
chromo-unclass Ty3-CHDII chromo-unclass Ty3-CHDII 42 3.9e-03
Reina Ty3-INT Reina Ty3-INT 1 9.2e-05
Reina Ty3-RT Reina Ty3-RT 1 9.2e-05

clusters with similarity:

Cluster Number of similarity hits
17 617000
88 219000
62 45000
71 262
6 1
66 1
75 1
80 1
111 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
17 2510 0.301
88 1670 0.337
62 604 0.114
71 70 0.0143
75 33 0.00589
103 9 0.00194
37 8 0.0014
111 7 0.00135
23 6 0.00121
85 5 0.00125
2 4 0.000491
3 4 0.000642
6 4 0.000626
16 4 0.000776
102 4 0.000804
107 4 0.00118
130 4 0.000853
134 4 0.00102
22 3 0.000563
24 3 0.000529
29 3 0.000675
33 3 0.000757
36 3 0.000716
48 3 0.000513
63 3 0.000535
110 3 0.000847
182 3 0.000866
4 2 0.000332
11 2 0.000326
12 2 0.000301
18 2 0.000449
19 2 0.000443
21 2 0.000404
26 2 0.000426
31 2 0.000263
32 2 0.000485
34 2 0.000401
45 2 0.000379
46 2 0.000475
47 2 0.000392
57 2 0.000542
66 2 0.000368
90 2 0.000397
99 2 0.000596
104 2 0.000572
106 2 0.000493
118 2 0.000575
124 2 0.000561
135 2 0.00055
146 2 0.000586
147 2 0.00038
163 2 0.000506
165 2 0.000519
169 2 0.000587
172 2 0.000521
189 2 0.000549
190 2 0.000581
208 2 0.000648
211 2 0.000626
245 2 0.000608
264 2 0.000685
362 2 0.000724
195000 2 0.000742
5 1 0.000237
10 1 0.000249
14 1 0.000168
15 1 2e-04
30 1 0.000161
35 1 0.000171
39 1 0.000244
40 1 0.000162
41 1 0.000179
43 1 0.000192
44 1 0.000178
49 1 0.000231
50 1 0.000234
52 1 0.000224
53 1 0.000182
54 1 0.000273
58 1 0.000286
59 1 0.000267
60 1 0.000268
64 1 0.000282
67 1 0.000209
68 1 0.000244
70 1 0.000284
72 1 0.000255
76 1 0.00025
77 1 0.000255
78 1 0.000195
80 1 0.00025
82 1 0.000274
83 1 0.00026
87 1 0.000252
93 1 0.00029
94 1 0.000335
95 1 0.000276
96 1 0.000273
98 1 0.000281
100 1 0.000277
101 1 0.00024
115 1 0.000227
116 1 0.000213
119 1 0.00031
120 1 0.000253
122 1 0.000258
136 1 0.000306
139 1 0.000265
141 1 0.000256
149 1 0.000298
153 1 0.000252
154 1 0.00031
157 1 0.00029
159 1 0.000287
160 1 0.000284
161 1 0.000251
166 1 0.000298
170 1 0.000267
174 1 0.000267
180 1 0.000323
186 1 0.000254
193 1 0.000318
195 1 0.000327
197 1 0.000278
200 1 0.000284
202 1 0.000333
205 1 0.000301
214 1 0.000333
220 1 0.000325
224 1 0.00036
238 1 0.000336
276 1 0.000325
301 1 0.000357
307 1 0.000356
321 1 0.000362
346 1 0.00036
393 1 0.000366
401 1 0.000367
464 1 0.000366
613 1 0.000369
688 1 0.000366
1550 1 0.000369
1690 1 0.00037
1890 1 0.00037
2740 1 0.00037
3290 1 0.00037
4840 1 0.00037
7380 1 0.000371
7640 1 0.00037
9610 1 0.000371
17500 1 0.000371
18100 1 0.000371
18500 1 0.000371
18600 1 0.000371
22400 1 0.000371
26500 1 0.000371
35000 1 0.000371
42600 1 0.000371
43900 1 0.000371
44900 1 0.000371
46200 1 0.000371
53200 1 0.000371
59100 1 0.000371
71700 1 0.000371
74600 1 0.000371
106000 1 0.000371
118000 1 0.000371
124000 1 0.000371
132000 1 0.000371
138000 1 0.000371
210000 1 0.000371
232000 1 0.000371
236000 1 0.000371
256000 1 0.000371
289000 1 0.000371
291000 1 0.000371
307000 1 0.000371
318000 1 0.000371
321000 1 0.000371

CL133 ----> CL17

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No. of shared pairs: :2508

CL133 ----> CL88

image

No. of shared pairs: :1667

CL133 ----> CL62

image

No. of shared pairs: :604

CL133 ----> CL71

image

No. of shared pairs: :70

CL133 ----> CL75

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No. of shared pairs: :33