Cluster no. 134

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Cluster is part of supercluster: 22

Cluster characteristics:

size 10883
size_real 10883
ecount 1129134
supercluster 22
annotations_summary 2.74% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-CHDII
0.04% Class_I/pararetrovirus:PARA-RT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-GAG
0.01% Class_I/LINE:LINE-RT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-GAG
pair_completeness 0.632613261326133
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.334834144996784
satellite_probability 7.483170545388e-09
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
LINE LINE-RT LINE LINE-RT 1 9.2e-05
pararetrovirus PARA-RT pararetrovirus PARA-RT 4 3.7e-04
Reina Ty3-CHDII Reina Ty3-CHDII 298 2.7e-02
TatII Ty3-GAG TatII Ty3-GAG 1 9.2e-05
TatV Ty3-GAG TatV Ty3-GAG 1 9.2e-05

clusters with similarity:

Cluster Number of similarity hits
91 755
252 502
205 47
17 5
2 2
4 1
9 1
24 1
47 1
114 1
122 1
123 1
150 1
180 1
189 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
91 331 0.176
252 171 0.114
205 126 0.0682
2 17 0.00255
7 16 0.00284
17 11 0.0016
48 10 0.00229
63 10 0.00242
90 10 0.0028
14 9 0.00201
24 9 0.00214
31 9 0.00147
4 8 0.00176
9 8 0.00211
12 8 0.00154
15 8 0.00227
16 8 0.00217
26 8 0.00248
33 8 0.00321
3 7 0.00147
11 7 0.0015
20 7 0.00153
25 7 0.00234
30 7 0.00148
47 7 0.00192
74 7 0.00266
86 7 0.00193
5 6 0.00219
23 6 0.00172
34 6 0.00171
36 6 0.00221
39 6 0.00229
100 6 0.00281
105 6 0.00227
130 6 0.00186
1 5 0.00108
6 5 0.00102
10 5 0.00196
19 5 0.00164
21 5 0.00144
22 5 0.0013
37 5 0.00118
40 5 0.00107
41 5 0.00122
45 5 0.00131
49 5 0.00175
59 5 0.00219
62 5 0.00131
66 5 0.00126
71 5 0.00146
78 5 0.00136
87 5 0.002
93 5 0.00253
97 5 0.00182
111 5 0.00135
114 5 0.00271
182 5 0.00251
13 4 0.00152
18 4 0.00134
27 4 0.0016
43 4 0.00107
46 4 0.00146
51 4 0.000997
64 4 0.00192
68 4 0.00152
75 4 0.000968
89 4 0.0016
98 4 0.00192
103 4 0.00126
113 4 0.00161
115 4 0.00136
120 4 0.00161
127 4 0.00167
133 4 0.00102
143 4 0.00167
150 4 0.00183
153 4 0.0016
165 4 0.00168
177 4 0.00242
183 4 0.00202
196 4 0.00177
4140 4 0.00325
11300 4 0.00326
8 3 0.00109
28 3 0.00115
29 3 0.00101
32 3 0.00113
35 3 0.000688
42 3 0.00101
44 3 0.000724
54 3 0.00137
67 3 0.000906
81 3 0.000881
85 3 0.00119
88 3 0.000863
92 3 0.00165
95 3 0.00139
99 3 0.00159
106 3 0.00116
108 3 0.00149
137 3 0.0014
138 3 0.00155
139 3 0.00131
145 3 0.00115
146 3 0.00154
151 3 0.00143
156 3 0.00147
161 3 0.0012
167 3 0.00118
181 3 0.00153
184 3 0.00185
189 3 0.00138
197 3 0.00141
200 3 0.00146
211 3 0.00174
245 3 0.00165
58100 3 0.00245
38 2 0.000839
50 2 0.000713
52 2 0.000666
53 2 0.000498
61 2 0.000713
65 2 0.000809
70 2 0.000973
96 2 0.000912
107 2 0.00105
110 2 0.000965
112 2 0.00107
122 2 0.00083
141 2 0.000819
142 2 0.000986
148 2 0.000891
154 2 0.00114
162 2 0.000842
168 2 0.00085
169 2 0.00103
171 2 0.000974
174 2 0.000881
179 2 0.0011
186 2 0.000808
191 2 0.000932
201 2 0.00151
208 2 0.00124
217 2 0.00116
220 2 0.00124
239 2 0.00131
242 2 0.00119
250 2 0.00145
251 2 0.00143
260 2 0.00141
306 2 0.00144
403 2 0.00154
4260 2 0.00163
5950 2 0.00163
13900 2 0.00163
31000 2 0.00163
38800 2 0.00163
41700 2 0.00163
54700 2 0.00163
65900 2 0.00163
74700 2 0.00163
74800 2 0.00163
76100 2 0.00163
194000 2 0.00163
248000 2 0.00163
251000 2 0.00163
255000 2 0.00163
292000 2 0.00163
55 1 0.000206
57 1 0.00045
58 1 0.000493
60 1 0.000443
69 1 0.000445
73 1 0.00049
76 1 0.000395
77 1 0.000409
79 1 0.00028
80 1 0.000395
82 1 0.000459
84 1 0.000366
94 1 0.000659
101 1 0.00037
102 1 0.000285
109 1 0.000526
116 1 0.00031
117 1 0.000422
118 1 0.000499
123 1 0.000449
124 1 0.000477
125 1 0.000511
128 1 0.000523
140 1 0.00032
152 1 0.000341
158 1 0.000463
159 1 0.000498
163 1 0.000403
173 1 0.000587
175 1 0.000556
180 1 0.000616
185 1 5e-04
192 1 0.000749
199 1 0.000672
204 1 0.000653
206 1 0.000598
207 1 0.000675
213 1 0.000436
215 1 0.00062
222 1 0.00063
223 1 0.000645
227 1 0.000656
231 1 0.00071
232 1 0.00062
240 1 0.000768
243 1 0.000551
248 1 0.000698
255 1 0.000602
258 1 0.000573
259 1 0.000699
264 1 0.00069
265 1 0.000743
267 1 0.000626
271 1 0.000755
276 1 0.000622
279 1 0.000685
283 1 0.000749
285 1 0.000739
287 1 0.000766
288 1 0.000681
291 1 0.000713
294 1 0.000722
295 1 0.00072
301 1 0.000752
302 1 0.000752
304 1 0.000791
307 1 0.000748
311 1 0.00077
317 1 0.000786
322 1 0.000771
326 1 0.000748
345 1 0.00073
349 1 0.000762
365 1 0.00077
368 1 0.000782
379 1 0.000795
384 1 8e-04
394 1 0.000764
404 1 0.000796
417 1 0.00078
424 1 0.000786
429 1 0.000787
452 1 0.000794
466 1 0.000792
474 1 0.000787
483 1 0.000792
489 1 0.000796
508 1 0.00078
550 1 0.000796
556 1 0.000799
572 1 0.00081
600 1 0.000808
609 1 0.000801
678 1 0.000798
706 1 0.000802
750 1 0.000812
820 1 0.000804
844 1 0.000807
979 1 0.000812
1040 1 0.000805
1120 1 0.000805
1230 1 0.000808
1450 1 0.000805
1470 1 0.000809
1620 1 0.000809
1710 1 0.000807
2250 1 0.00081
2260 1 0.00081
2610 1 0.000814
2660 1 0.000813
2730 1 0.000813
2760 1 0.000813
2840 1 0.000812
2900 1 0.000813
3040 1 0.000811
3140 1 0.000811
6200 1 0.000814
6840 1 0.000813
6840 1 0.000815
7490 1 0.000814
7700 1 0.000816
7720 1 0.000813
7760 1 0.000815
7820 1 0.000814
8950 1 0.000815
9570 1 0.000814
10500 1 0.000815
11700 1 0.000814
12100 1 0.000815
12300 1 0.000815
13200 1 0.000814
15000 1 0.000815
18100 1 0.000816
18400 1 0.000815
19200 1 0.000815
20200 1 0.000815
21200 1 0.000816
21200 1 0.000816
21700 1 0.000816
22400 1 0.000816
22800 1 0.000816
23500 1 0.000816
23800 1 0.000816
24600 1 0.000815
24900 1 0.000815
25500 1 0.000816
25700 1 0.000816
27000 1 0.000815
27800 1 0.000816
30300 1 0.000816
31100 1 0.000816
38100 1 0.000815
38200 1 0.000815
39200 1 0.000815
39800 1 0.000815
40700 1 0.000815
41900 1 0.000815
42400 1 0.000816
42800 1 0.000815
42900 1 0.000816
47700 1 0.000816
48200 1 0.000816
50300 1 0.000816
51900 1 0.000816
58000 1 0.000816
58700 1 0.000816
60000 1 0.000816
61700 1 0.000816
63900 1 0.000816
67900 1 0.000816
68500 1 0.000816
69100 1 0.000816
70000 1 0.000816
70600 1 0.000816
79100 1 0.000816
79700 1 0.000816
82700 1 0.000816
82900 1 0.000816
83600 1 0.000816
96400 1 0.000816
1e+05 1 0.000816
107000 1 0.000816
112000 1 0.000816
114000 1 0.000816
115000 1 0.000816
116000 1 0.000816
120000 1 0.000816
130000 1 0.000816
137000 1 0.000816
143000 1 0.000816
147000 1 0.000816
152000 1 0.000816
154000 1 0.000816
156000 1 0.000816
158000 1 0.000816
164000 1 0.000816
174000 1 0.000816
182000 1 0.000816
188000 1 0.000816
198000 1 0.000816
2e+05 1 0.000816
217000 1 0.000816
223000 1 0.000816
230000 1 0.000816
234000 1 0.000816
235000 1 0.000816
250000 1 0.000816
250000 1 0.000816
253000 1 0.000816
257000 1 0.000816
273000 1 0.000816
288000 1 0.000816
289000 1 0.000816
291000 1 0.000816
302000 1 0.000816
304000 1 0.000816
309000 1 0.000816
313000 1 0.000816
314000 1 0.000816
315000 1 0.000816
320000 1 0.000816
329000 1 0.000816
329000 1 0.000816
331000 1 0.000816
334000 1 0.000816
348000 1 0.000816

CL134 ----> CL91

image

No. of shared pairs: :331

CL134 ----> CL252

image

No. of shared pairs: :171

CL134 ----> CL205

image

No. of shared pairs: :126

CL134 ----> CL2

image

No. of shared pairs: :17

CL134 ----> CL7

image

No. of shared pairs: :16

CL134 ----> CL17

image

No. of shared pairs: :11

CL134 ----> CL48

image

No. of shared pairs: :10

CL134 ----> CL63

image

No. of shared pairs: :10

CL134 ----> CL90

image

No. of shared pairs: :10