Cluster no. 137

Go back to cluster table

Cluster is part of supercluster: 14

Cluster characteristics:

size 10730
size_real 10730
ecount 710357
supercluster 14
annotations_summary 10.85% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-RH
0.85% Class_I/LTR/Ty1_copia/Ivana:Ty1-RH
0.15% Class_I/LTR/Ty1_copia/Tork:Ty1-RH
0.07% Class_II/Subclass_1/TIR/hAT:hAT-TPase
0.06% Class_I/LTR/Ty1_copia/Ale:Ty1-RH
0.04% Class_I/LTR/Ty1_copia/Alesia:Ty1-RH
0.02% Class_I/LTR/Ty1_copia/Gymco-I:Ty1-RH
0.01% organelle/mitochondria
0.01% Class_I/LTR/Ty1_copia/SIRE:Ty1-RH
0.01% Class_I/LTR/Ty1_copia/Osser:Ty1-RH
0.01% Class_I/LTR/Ty1_copia/Angela:Ty1-RH
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-INT
pair_completeness 0.707782906254974
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.153774464119292
satellite_probability 2.46518704047305e-15
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 1 9.3e-05
Ale Ty1-RH Ale Ty1-RH 6 5.6e-04
Alesia Ty1-RH Alesia Ty1-RH 4 3.7e-04
Angela Ty1-RH Angela Ty1-RH 1 9.3e-05
Gymco-I Ty1-RH Gymco-I Ty1-RH 2 1.9e-04
Gymco-II Ty1-RH Gymco-II Ty1-RH 1164 1.1e-01
Ivana Ty1-RH Ivana Ty1-RH 91 8.5e-03
Osser Ty1-RH Osser Ty1-RH 1 9.3e-05
SIRE Ty1-RH SIRE Ty1-RH 1 9.3e-05
Tork Ty1-RH Tork Ty1-RH 16 1.5e-03
Galadriel Ty3-INT Galadriel Ty3-INT 1 9.3e-05
hAT hAT-TPase hAT hAT-TPase 7 6.5e-04

clusters with similarity:

Cluster Number of similarity hits
25 1800
30 1080
9 1
51 1
68 1
212 1
351 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
30 583 0.131
25 580 0.216
51 14 0.00378
2 11 0.00173
78 8 0.00238
122 8 0.0038
23 7 0.00219
33 6 0.00274
4160 6 0.00651
72 5 0.00233
98 5 0.00281
7980 5 0.00543
1 4 0.000921
3 4 0.000898
17 4 0.00061
35 4 0.000986
48 4 0.000984
68 4 0.00172
102 4 0.00125
212 4 0.00321
12 3 0.000615
14 3 0.000718
15 3 0.000933
22 3 0.000844
24 3 0.00077
39 3 0.0013
59 3 0.00152
74 3 0.00129
134 3 0.0014
271 3 0.00295
631 3 0.00319
7420 3 0.00325
4 2 0.000471
6 2 0.000434
9 2 0.000575
11 2 0.000458
20 2 0.000469
29 2 0.000751
50 2 8e-04
60 2 0.00102
66 2 0.000548
67 2 0.000665
69 2 0.00103
104 2 0.00116
111 2 0.000587
119 2 0.00138
128 2 0.00125
131 2 0.0017
138 2 0.00123
144 2 0.00142
145 2 0.00087
176 2 0.00143
199 2 0.00169
218 2 0.00178
15600 2 0.00217
20700 2 0.00217
189000 2 0.00218
253000 2 0.00218
263000 2 0.00218
5 1 0.00041
7 1 0.000188
8 1 0.000407
10 1 0.000445
19 1 0.000365
26 1 0.000342
28 1 0.000436
31 1 0.000172
36 1 0.000414
43 1 0.000291
45 1 0.000286
46 1 0.000411
49 1 0.000391
58 1 0.000581
62 1 0.000284
63 1 0.000261
64 1 0.000564
65 1 0.000462
77 1 0.000467
79 1 0.000307
80 1 0.000449
84 1 0.000412
85 1 0.000453
86 1 0.000302
87 1 0.000456
88 1 0.000316
89 1 0.000455
91 1 0.000637
96 1 0.00053
97 1 0.00041
99 1 0.000635
100 1 0.000546
105 1 0.000429
106 1 0.000438
107 1 0.000625
108 1 0.000588
112 1 0.000641
114 1 0.000651
115 1 0.00038
120 1 0.000459
123 1 0.000521
126 1 0.000494
127 1 0.00048
130 1 0.000343
139 1 0.000502
147 1 0.000286
149 1 0.000633
151 1 0.00056
152 1 0.000381
153 1 0.000457
156 1 0.000575
158 1 0.00054
159 1 0.000588
162 1 0.000484
164 1 0.000886
168 1 0.000489
173 1 0.000715
175 1 0.00067
179 1 0.000664
186 1 0.000461
190 1 0.000602
192 1 0.000972
198 1 0.000757
206 1 0.000732
214 1 0.000814
217 1 0.000702
221 1 0.000867
222 1 0.00078
223 1 0.000804
242 1 0.000727
245 1 0.00066
276 1 0.000768
277 1 0.000954
291 1 0.000912
341 1 0.000989
405 1 0.00102
449 1 0.00104
503 1 0.00106
505 1 0.00103
627 1 0.00105
643 1 0.00107
700 1 0.00106
917 1 0.00107
1400 1 0.00107
2010 1 0.00107
2010 1 0.00108
2730 1 0.00108
4300 1 0.00108
5210 1 0.00108
8690 1 0.00109
9490 1 0.00109
9520 1 0.00109
10700 1 0.00109
11000 1 0.00109
11100 1 0.00109
13400 1 0.00109
15000 1 0.00109
18500 1 0.00109
20800 1 0.00109
21800 1 0.00109
22100 1 0.00109
24200 1 0.00109
26800 1 0.00109
32600 1 0.00109
33100 1 0.00109
33500 1 0.00109
45700 1 0.00109
48100 1 0.00109
71500 1 0.00109
71600 1 0.00109
74400 1 0.00109
81400 1 0.00109
81400 1 0.00109
97200 1 0.00109
110000 1 0.00109
113000 1 0.00109
114000 1 0.00109
133000 1 0.00109
134000 1 0.00109
195000 1 0.00109
199000 1 0.00109
203000 1 0.00109
206000 1 0.00109
207000 1 0.00109
216000 1 0.00109
219000 1 0.00109
249000 1 0.00109
337000 1 0.00109
339000 1 0.00109

CL137 ----> CL30

image

No. of shared pairs: :583

CL137 ----> CL25

image

No. of shared pairs: :580

CL137 ----> CL51

image

No. of shared pairs: :14

CL137 ----> CL2

image

No. of shared pairs: :11