Cluster no. 141

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Cluster is part of supercluster: 12

Cluster characteristics:

size 10360
size_real 10360
ecount 2824029
supercluster 12
annotations_summary 38.22% Class_I/LTR/Ty1_copia/Tork:Ty1-INT
11.36% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT
8.14% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-INT
5.82% Class_I/LTR/Ty1_copia/Bryco:Ty1-INT
1.86% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
1.37% organelle/mitochondria
1.14% Class_I/LTR/Ty1_copia/Alesia:Ty1-INT
0.38% Class_I/LTR/Ty1_copia/Ikeros:Ty1-INT
0.17% Class_I/LTR/Ty1_copia/Osser:Ty1-INT
0.13% Class_I/LTR/Ty1_copia/Angela:Ty1-INT
0.11% Class_I/LTR/Ty1_copia/TAR:Ty1-INT
0.10% Class_I/LTR/Ty1_copia/Ty1-outgroup:Ty1-INT
0.05% Class_I/LTR/Ty1_copia/SIRE:Ty1-INT
0.01% Class_I/LTR/Ty1_copia/Tork:Ty1-RH
0.01% Class_I/LTR/Ty1_copia/SIRE:Ty1-RH
pair_completeness 0.619509144911677
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0335907335907336
satellite_probability 8.45426015332044e-20
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 142 1.4e-02
Ale Ty1-INT Ale Ty1-INT 193 1.9e-02
Alesia Ty1-INT Alesia Ty1-INT 118 1.1e-02
Angela Ty1-INT Angela Ty1-INT 13 1.3e-03
Bryco Ty1-INT Bryco Ty1-INT 603 5.8e-02
Gymco-II Ty1-INT Gymco-II Ty1-INT 843 8.1e-02
Ikeros Ty1-INT Ikeros Ty1-INT 39 3.8e-03
Ivana Ty1-INT Ivana Ty1-INT 1177 1.1e-01
Osser Ty1-INT Osser Ty1-INT 18 1.7e-03
SIRE Ty1-INT SIRE Ty1-INT 5 4.8e-04
TAR Ty1-INT TAR Ty1-INT 11 1.1e-03
Tork Ty1-INT Tork Ty1-INT 3960 3.8e-01
Ty1-outgroup Ty1-INT Ty1-outgroup Ty1-INT 10 9.7e-04
SIRE Ty1-RH SIRE Ty1-RH 1 9.7e-05
Tork Ty1-RH Tork Ty1-RH 1 9.7e-05

clusters with similarity:

Cluster Number of similarity hits
76 24400
113 24400
51 9
30 2
16 1
29 1
31 1
32 1
36 1
187 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
113 1010 0.41
76 860 0.341
17 10 0.00146
31 10 0.00164
130 9 0.0028
98 7 0.00337
6 6 0.00122
33 6 0.00241
15 5 0.00142
19 5 0.00165
74 5 0.0019
3 4 0.000842
4 4 0.00088
7 4 0.00071
23 4 0.00115
27 4 0.00161
29 4 0.00135
36 4 0.00147
49 4 0.0014
84 4 0.00147
127 4 0.00168
14500 4 0.00328
9 3 0.000794
11 3 0.000643
14 3 0.00067
22 3 0.000779
46 3 0.0011
48 3 0.000687
50 3 0.00107
60 3 0.00133
63 3 0.000727
66 3 0.000759
72 3 0.00123
102 3 0.000857
153 3 0.00121
168 3 0.00128
10 2 0.000786
18 2 0.000671
20 2 0.000439
25 2 0.000669
45 2 0.000526
58 2 0.00099
67 2 0.000605
69 2 0.000894
85 2 0.000798
92 2 0.0011
97 2 0.000731
99 2 0.00107
110 2 0.000968
120 2 0.000807
121 2 0.00116
126 2 0.00086
134 2 0.000819
136 2 0.00112
139 2 0.000873
144 2 0.00117
163 2 0.000809
169 2 0.00104
182 2 0.00101
203 2 0.00114
2 1 0.00015
5 1 0.000365
8 1 0.000363
12 1 0.000193
13 1 0.00038
24 1 0.000238
30 1 0.000211
32 1 0.000378
34 1 0.000285
35 1 0.00023
38 1 0.000421
39 1 0.000383
42 1 0.000338
43 1 0.000268
47 1 0.000276
51 1 0.00025
52 1 0.000334
59 1 0.00044
61 1 0.000357
65 1 0.000406
71 1 0.000293
73 1 0.000492
77 1 0.00041
78 1 0.000273
79 1 0.000281
82 1 0.000461
86 1 0.000277
90 1 0.000281
93 1 0.000509
95 1 0.000467
96 1 0.000458
103 1 0.000316
105 1 0.00038
109 1 0.000528
111 1 0.00027
115 1 0.000342
128 1 0.000525
129 1 0.000557
133 1 0.000256
135 1 0.000463
138 1 0.000518
142 1 0.000495
143 1 0.00042
154 1 0.000571
156 1 0.000491
157 1 0.000507
158 1 0.000465
160 1 0.000489
164 1 0.000701
171 1 0.000489
176 1 0.000589
177 1 0.000607
179 1 0.000554
181 1 0.000513
183 1 0.000506
187 1 0.000545
188 1 0.000756
189 1 0.000462
192 1 0.000753
194 1 0.000718
202 1 0.000656
205 1 0.000544
206 1 0.000601
208 1 0.000621
213 1 0.000438
215 1 0.000623
217 1 0.00058
222 1 0.000633
229 1 0.000548
232 1 0.000623
238 1 0.000668
240 1 0.000772
244 1 0.000755
259 1 0.000702
263 1 0.000588
268 1 0.000681
271 1 0.00076
282 1 0.00073
297 1 0.000749
353 1 0.000785
390 1 0.000792
634 1 0.000812
730 1 0.000804
772 1 0.000813
788 1 0.000814
851 1 0.000813
1630 1 0.000812
2060 1 0.000818
2190 1 0.000815
2390 1 0.000817
4110 1 0.000817
4660 1 0.000818
4700 1 0.00082
4870 1 0.000819
5800 1 0.000819
6160 1 0.000819
6490 1 0.000818
7430 1 0.000819
8230 1 0.00082
9280 1 0.00082
10100 1 0.00082
10500 1 0.000819
19800 1 0.00082
22700 1 0.000821
24000 1 0.000821
32800 1 0.000821
36500 1 0.00082
39500 1 0.000821
39900 1 0.00082
45300 1 0.000821
45500 1 0.000821
47100 1 0.000821
47700 1 0.000821
54600 1 0.000821
64300 1 0.000821
75100 1 0.000821
78800 1 0.000821
81800 1 0.000821
153000 1 0.000821
169000 1 0.000821
177000 1 0.000821
182000 1 0.000821
190000 1 0.000821
201000 1 0.000821
213000 1 0.000821
293000 1 0.000821
296000 1 0.000821
306000 1 0.000821
311000 1 0.000821
318000 1 0.000821
336000 1 0.000821

CL141 ----> CL113

image

No. of shared pairs: :1013

CL141 ----> CL76

image

No. of shared pairs: :860

CL141 ----> CL17

image

No. of shared pairs: :10

CL141 ----> CL31

image

No. of shared pairs: :10