Cluster no. 144

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Cluster is part of supercluster: 66

Cluster characteristics:

size 10060
size_real 10060
ecount 224343
supercluster 66
annotations_summary 17.15% Class_I/LTR/Ty1_copia/Tork:Ty1-RT
12.68% Class_I/LTR/Ty1_copia/Tork:Ty1-INT
9.07% Class_I/LTR/Ty1_copia/Tork:Ty1-RH
4.88% Class_I/LTR/Ty1_copia/Tork:Ty1-PROT
4.73% Class_I/LTR/Ty1_copia/Tork:Ty1-GAG
1.02% organelle/mitochondria
0.37% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
0.33% Class_I/LTR/Ty1_copia/Ivana:Ty1-RH
0.09% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
0.04% Class_I/LTR/Ty1_copia/TAR:Ty1-RT
0.03% Class_I/LTR/Ty1_copia/Ikeros:Ty1-RT
0.01% Class_I/LTR/Ty1_copia/SIRE:Ty1-RH
0.01% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT
0.01% Class_I/LTR/Ty1_copia/Angela:Ty1-RT
0.01% Class_I/LTR/Ty1_copia/Gymco-I:Ty1-INT
pair_completeness 0.821473836682962
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000695825049701789
satellite_probability 1.76339170420733e-23
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 103 1.0e-02
Tork Ty1-GAG Tork Ty1-GAG 476 4.7e-02
Gymco-I Ty1-INT Gymco-I Ty1-INT 1 9.9e-05
Ivana Ty1-INT Ivana Ty1-INT 1 9.9e-05
Tork Ty1-INT Tork Ty1-INT 1276 1.3e-01
Tork Ty1-PROT Tork Ty1-PROT 491 4.9e-02
Ivana Ty1-RH Ivana Ty1-RH 33 3.3e-03
SIRE Ty1-RH SIRE Ty1-RH 1 9.9e-05
Tork Ty1-RH Tork Ty1-RH 912 9.1e-02
Ale Ty1-RT Ale Ty1-RT 9 8.9e-04
Angela Ty1-RT Angela Ty1-RT 1 9.9e-05
Ikeros Ty1-RT Ikeros Ty1-RT 3 3.0e-04
SIRE Ty1-RT SIRE Ty1-RT 37 3.7e-03
TAR Ty1-RT TAR Ty1-RT 4 4.0e-04
Tork Ty1-RT Tork Ty1-RT 1725 1.7e-01

clusters with similarity:

Cluster Number of similarity hits
95 4
23 1
54 1
159 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
38 8 0.00484
54 7 0.0048
7720 6 0.0121
1 5 0.00128
6 4 0.000955
16 4 0.00135
17 4 0.000652
31 4 0.000742
41 4 0.00118
48 4 0.0011
102 4 0.00144
28900 4 0.00807
4 3 0.000785
9 3 0.000983
21 3 0.00109
23 3 0.00109
26 3 0.0012
30 3 0.000748
44 3 0.00088
46 3 0.00149
66 3 0.00093
74 3 0.00158
76 3 0.00167
130 3 0.00121
213 3 0.00192
245 3 0.00275
1870 3 0.006
12500 3 0.00604
14100 3 0.00607
19400 3 0.00606
26300 3 0.00607
27900 3 0.00607
36400 3 0.00606
60200 3 0.00607
84200 3 0.00607
5 2 0.000993
7 2 0.000408
12 2 0.000449
13 2 0.00105
19 2 0.000864
37 2 0.000569
56 2 0.0028
60 2 0.00131
67 2 0.000775
78 2 0.000682
84 2 0.001
89 2 0.00113
97 2 0.000994
99 2 0.00174
101 2 0.00101
109 2 0.00171
114 2 0.0018
126 2 0.00125
132 2 0.00163
137 2 0.00142
141 2 0.00117
163 2 0.00114
172 2 0.00122
180 2 0.00224
257 2 0.00325
390 2 0.00371
13200 2 0.00404
59900 2 0.00404
64500 2 0.00404
84400 2 0.00404
86200 2 0.00405
140000 2 0.00405
2e+05 2 0.00405
216000 2 0.00405
256000 2 0.00405
304000 2 0.00405
348000 2 0.00405
2 1 0.000168
3 1 0.000248
8 1 0.000492
10 1 0.000549
14 1 0.000266
15 1 0.000358
18 1 0.000443
20 1 0.000261
24 1 0.000288
27 1 0.000566
32 1 0.000521
33 1 0.000568
34 1 0.000359
35 1 0.000275
39 1 0.00053
40 1 0.000253
42 1 0.000447
50 1 0.000482
52 1 0.00044
53 1 0.000304
55 1 0.000242
57 1 0.000671
63 1 0.000294
64 1 0.000743
68 1 0.000528
70 1 0.000755
71 1 0.000372
73 1 0.000763
79 1 0.000353
80 1 0.000555
82 1 0.000691
83 1 0.000608
86 1 0.000346
88 1 0.000364
91 1 0.000873
93 1 0.000805
94 1 0.00127
98 1 0.000738
100 1 0.000711
103 1 0.00041
104 1 0.000771
105 1 0.000524
107 1 0.00085
108 1 0.000783
111 1 0.000335
113 1 0.000572
116 1 4e-04
117 1 0.000611
118 1 0.000785
119 1 0.000979
120 1 0.00057
123 1 0.000669
127 1 0.000603
128 1 0.000847
129 1 0.000934
145 1 0.000534
151 1 0.000735
155 1 0.000825
157 1 8e-04
162 1 0.000609
165 1 0.000606
168 1 0.000617
169 1 0.000828
176 1 0.00103
179 1 0.000924
184 1 0.00112
186 1 0.000574
194 1 0.00149
195 1 0.00117
198 1 0.00112
200 1 0.000758
202 1 0.00125
223 1 0.00122
228 1 0.00138
229 1 0.000909
230 1 0.00154
233 1 0.00155
251 1 0.0015
254 1 0.00159
255 1 0.00108
261 1 0.00185
269 1 0.0016
272 1 0.00117
276 1 0.00114
279 1 0.00137
287 1 0.00174
299 1 0.00185
310 1 0.00193
318 1 0.00148
424 1 0.00185
574 1 0.00198
596 1 0.00195
801 1 0.00198
1080 1 0.00195
1150 1 0.00194
1500 1 0.002
1700 1 0.00201
2130 1 0.00201
2420 1 0.00199
2500 1 0.002
3080 1 0.002
3290 1 0.00199
3540 1 0.00201
4150 1 0.00201
4520 1 0.00201
6230 1 0.00201
6720 1 0.00202
7970 1 0.00202
8730 1 0.00202
9910 1 0.00201
11100 1 0.00202
11200 1 0.00202
19400 1 0.00202
20000 1 0.00202
20500 1 0.00202
20900 1 0.00202
21700 1 0.00202
22400 1 0.00202
22400 1 0.00202
23300 1 0.00202
26300 1 0.00202
27300 1 0.00202
27400 1 0.00202
28000 1 0.00202
28800 1 0.00202
32700 1 0.00202
33400 1 0.00202
34600 1 0.00202
36800 1 0.00202
37500 1 0.00202
38100 1 0.00202
39600 1 0.00202
40200 1 0.00202
45800 1 0.00203
51100 1 0.00202
52200 1 0.00203
53400 1 0.00203
66400 1 0.00203
68600 1 0.00203
68700 1 0.00203
72400 1 0.00203
72600 1 0.00203
72800 1 0.00202
72800 1 0.00203
74600 1 0.00203
78800 1 0.00203
81400 1 0.00203
81700 1 0.00202
84500 1 0.00202
95700 1 0.00202
99300 1 0.00202
1e+05 1 0.00202
107000 1 0.00202
113000 1 0.00202
116000 1 0.00202
134000 1 0.00202
151000 1 0.00202
156000 1 0.00202
158000 1 0.00202
159000 1 0.00202
163000 1 0.00202
182000 1 0.00202
190000 1 0.00202
193000 1 0.00202
203000 1 0.00202
214000 1 0.00202
228000 1 0.00202
229000 1 0.00202
236000 1 0.00202
246000 1 0.00202
248000 1 0.00202
257000 1 0.00202
259000 1 0.00202
265000 1 0.00202
267000 1 0.00202
270000 1 0.00202
276000 1 0.00202
284000 1 0.00202
287000 1 0.00202
299000 1 0.00202
301000 1 0.00202
304000 1 0.00202
306000 1 0.00202
307000 1 0.00202
316000 1 0.00202
334000 1 0.00202
337000 1 0.00202
341000 1 0.00202
342000 1 0.00202