Cluster no. 146

Go back to cluster table

Cluster is part of supercluster: 3

Cluster characteristics:

size 9810
size_real 9810
ecount 600817
supercluster 3
annotations_summary 0.03% Class_I/LTR/Ty1_copia/SIRE:Ty1-GAG
0.03% organelle/plastid
0.02% Class_I/LTR/Ty1_copia/Ivana:Ty1-GAG
pair_completeness 0.744620309443358
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00203873598369011
satellite_probability 8.20691448488047e-23
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 3 0.00031
Ivana Ty1-GAG Ivana Ty1-GAG 2 0.00020
SIRE Ty1-GAG SIRE Ty1-GAG 3 0.00031

clusters with similarity:

Cluster Number of similarity hits
3 2380
105 1220
65 296
6 10
39 3
31 2
17 1
33 1
213 1
471 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
105 437 0.205
3 329 0.0773
65 98 0.0498
6 27 0.00612
471 20 0.0259
962 7 0.00953
6200 7 0.00969
18 6 0.00242
48 6 0.00155
16 5 0.00157
17 5 0.000786
15 4 0.00133
38 4 0.00213
41 4 0.00111
59 4 0.00226
110 4 0.00255
14 3 0.000754
31 3 0.000534
39 3 0.00142
67 3 0.00107
72 3 0.00154
97 3 0.00134
134 3 0.00154
245 3 0.00228
3020 3 0.00413
2 2 0.000324
5 2 0.000893
9 2 0.00061
22 2 0.000596
24 2 0.000541
25 2 0.000804
29 2 0.000812
30 2 0.000472
32 2 0.000933
33 2 0.00101
42 2 0.000813
56 2 0.00213
63 2 0.000551
66 2 0.00058
85 2 0.000996
92 2 0.00152
106 2 0.000961
111 2 0.000623
121 2 0.00164
133 2 0.000586
158 2 0.00121
195 2 0.00185
208 2 0.0018
213 2 0.00112
39700 2 0.00278
46200 2 0.00278
81600 2 0.00278
124000 2 0.00278
148000 2 0.00278
342000 2 0.00278
4 1 0.000247
10 1 0.000489
11 1 0.00024
12 1 0.000214
19 1 0.000394
20 1 0.000246
21 1 0.000336
23 1 0.000335
26 1 0.000367
27 1 0.000502
28 1 0.000477
40 1 0.000239
50 1 0.000435
51 1 0.000285
53 1 0.000285
54 1 0.000595
58 1 0.000657
60 1 0.000571
62 1 0.000301
68 1 0.000472
69 1 0.000575
73 1 0.000651
76 1 0.000495
77 1 0.000515
84 1 0.000449
87 1 0.000502
93 1 0.000682
95 1 0.000608
96 1 0.000593
98 1 0.000633
102 1 0.000333
107 1 0.000714
114 1 0.000749
116 1 0.000367
147 1 0.000304
149 1 0.000725
164 1 0.00108
172 1 0.000537
173 1 0.000834
174 1 0.000567
175 1 0.000774
177 1 0.00087
178 1 0.00085
182 1 0.000672
187 1 0.000749
199 1 0.00102
201 1 0.00122
204 1 0.000975
206 1 0.000858
212 1 0.000956
222 1 0.000925
232 1 0.000903
241 1 0.001
250 1 0.00115
272 1 0.000925
313 1 0.00119
334 1 0.00134
351 1 0.00119
365 1 0.00126
383 1 0.00126
426 1 0.00126
473 1 0.00138
567 1 0.00132
573 1 0.00133
1390 1 0.00136
2500 1 0.00138
3040 1 0.00138
3130 1 0.00138
3200 1 0.00139
3910 1 0.00139
4120 1 0.00139
4330 1 0.00138
9420 1 0.00138
9490 1 0.00139
10900 1 0.00139
13600 1 0.00139
13700 1 0.00139
20200 1 0.00139
21600 1 0.00139
25700 1 0.00139
29300 1 0.00139
32000 1 0.00139
32800 1 0.00139
42300 1 0.00139
47200 1 0.00139
55100 1 0.00139
57400 1 0.00139
74000 1 0.00139
84100 1 0.00139
134000 1 0.00139
143000 1 0.00139
157000 1 0.00139
160000 1 0.00139
178000 1 0.00139
179000 1 0.00139
190000 1 0.00139
211000 1 0.00139
223000 1 0.00139
231000 1 0.00139
236000 1 0.00139
240000 1 0.00139
255000 1 0.00139
264000 1 0.00139
268000 1 0.00139
294000 1 0.00139
298000 1 0.00139
298000 1 0.00139
310000 1 0.00139
315000 1 0.00139
344000 1 0.00139

CL146 ----> CL105

image

No. of shared pairs: :437

CL146 ----> CL3

image

No. of shared pairs: :329

CL146 ----> CL65

image

No. of shared pairs: :98

CL146 ----> CL6

image

No. of shared pairs: :27

CL146 ----> CL471

image

No. of shared pairs: :20