Cluster no. 149

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Cluster is part of supercluster: 69

Cluster characteristics:

size 9568
size_real 9568
ecount 60847
supercluster 69
annotations_summary 13.36% Class_I/LTR/Ty1_copia/Gymco-I:Ty1-RT
9.02% Class_I/LTR/Ty1_copia/Gymco-I:Ty1-INT
7.23% Class_I/LTR/Ty1_copia/Gymco-I:Ty1-RH
3.25% Class_I/LTR/Ty1_copia/Gymco-I:Ty1-GAG
3.24% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
2.60% Class_I/LTR/Ty1_copia/Gymco-I:Ty1-PROT
2.48% Class_I/LTR/Ty1_copia/Ivana:Ty1-RT
2.28% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT
2.07% Class_I/LTR/Ty1_copia/Ivana:Ty1-RH
0.74% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-RT
0.68% organelle/mitochondria
0.64% Class_I/LTR/Ty1_copia/Tork:Ty1-INT
0.53% Class_I/LTR/Ty1_copia/Ikeros:Ty1-RT
0.43% Class_I/LTR/Ty1_copia/Tork:Ty1-RT
0.34% Class_I/LTR/Ty1_copia/Alesia:Ty1-RH
0.34% Class_I/LTR/Ty1_copia/Ale:Ty1-RH
0.33% Class_I/LTR/Ty1_copia/Ivana:Ty1-PROT
0.32% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
0.19% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.18% Class_I/LTR/Ty1_copia/Bryco:Ty1-RT
0.18% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-PROT
0.17% Class_I/LTR/Ty1_copia/TAR:Ty1-INT
0.17% Class_I/LTR/Ty1_copia/TAR:Ty1-RT
0.09% Class_I/LTR/Ty1_copia/Ty1-outgroup:Ty1-INT
0.07% Class_I/LTR/Ty1_copia/Bryco:Ty1-RH
0.06% Class_I/LTR/Ty1_copia/SIRE:Ty1-RH
0.06% Class_I/LTR/Ty1_copia/SIRE:Ty1-INT
0.05% Class_I/LTR/Ty1_copia/Ale:Ty1-PROT
0.04% Class_I/LTR/Ty1_copia/Tork:Ty1-PROT
0.04% Class_I/LTR/Ty1_copia/Angela:Ty1-RT
0.03% Class_I/LTR/Ty1_copia/Tork:Ty1-RH
0.03% Class_I/LTR/Ty1_copia/Bryco:Ty1-INT
0.03% Class_I/LTR/Ty1_copia/Alesia:Ty1-INT
0.03% Class_I/LTR/Ty1_copia/Angela:Ty1-INT
0.02% Class_I/LTR/Ty1_copia/TAR:Ty1-PROT
0.02% Class_I/LTR/Ty1_copia/Bryco:Ty1-PROT
0.01% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-RH
0.01% Class_I/LTR/Ty1_copia/Alesia:Ty1-RT
0.01% Class_I/LTR/Ty1_copia/Ikeros:Ty1-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.01% Class_I/LTR/Ty1_copia/Ale:Ty1-GAG
pair_completeness 0.756885787734117
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000104515050167224
satellite_probability 5.68788576307886e-23
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 65 0.00679
Ale Ty1-GAG Ale Ty1-GAG 1 0.00010
Gymco-I Ty1-GAG Gymco-I Ty1-GAG 311 0.03250
Ale Ty1-INT Ale Ty1-INT 18 0.00188
Alesia Ty1-INT Alesia Ty1-INT 3 0.00031
Angela Ty1-INT Angela Ty1-INT 3 0.00031
Bryco Ty1-INT Bryco Ty1-INT 3 0.00031
Gymco-I Ty1-INT Gymco-I Ty1-INT 863 0.09020
Ikeros Ty1-INT Ikeros Ty1-INT 1 0.00010
Ivana Ty1-INT Ivana Ty1-INT 218 0.02278
SIRE Ty1-INT SIRE Ty1-INT 6 0.00063
TAR Ty1-INT TAR Ty1-INT 16 0.00167
Tork Ty1-INT Tork Ty1-INT 61 0.00638
Ty1-outgroup Ty1-INT Ty1-outgroup Ty1-INT 9 0.00094
Ale Ty1-PROT Ale Ty1-PROT 5 0.00052
Bryco Ty1-PROT Bryco Ty1-PROT 2 0.00021
Gymco-I Ty1-PROT Gymco-I Ty1-PROT 249 0.02602
Gymco-II Ty1-PROT Gymco-II Ty1-PROT 17 0.00178
Ivana Ty1-PROT Ivana Ty1-PROT 32 0.00334
TAR Ty1-PROT TAR Ty1-PROT 2 0.00021
Tork Ty1-PROT Tork Ty1-PROT 4 0.00042
Ale Ty1-RH Ale Ty1-RH 33 0.00345
Alesia Ty1-RH Alesia Ty1-RH 33 0.00345
Bryco Ty1-RH Bryco Ty1-RH 7 0.00073
Gymco-I Ty1-RH Gymco-I Ty1-RH 692 0.07232
Gymco-II Ty1-RH Gymco-II Ty1-RH 1 0.00010
Ivana Ty1-RH Ivana Ty1-RH 198 0.02069
SIRE Ty1-RH SIRE Ty1-RH 6 0.00063
Tork Ty1-RH Tork Ty1-RH 3 0.00031
Ale Ty1-RT Ale Ty1-RT 310 0.03240
Alesia Ty1-RT Alesia Ty1-RT 1 0.00010
Angela Ty1-RT Angela Ty1-RT 4 0.00042
Bryco Ty1-RT Bryco Ty1-RT 17 0.00178
Gymco-I Ty1-RT Gymco-I Ty1-RT 1278 0.13357
Gymco-II Ty1-RT Gymco-II Ty1-RT 71 0.00742
Ikeros Ty1-RT Ikeros Ty1-RT 51 0.00533
Ivana Ty1-RT Ivana Ty1-RT 237 0.02477
SIRE Ty1-RT SIRE Ty1-RT 31 0.00324
TAR Ty1-RT TAR Ty1-RT 16 0.00167
Tork Ty1-RT Tork Ty1-RT 41 0.00429
Reina Ty3-INT Reina Ty3-INT 1 0.00010

clusters with similarity:

Cluster Number of similarity hits
51 3
81 2
15 1
32 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
4010 9 0.0135
17 8 0.00127
1860 6 0.00893
2600 6 0.00894
8290 6 0.00901
23 5 0.0017
66 5 0.00147
1020 5 0.00747
2450 5 0.00748
9220 5 0.0075
10900 5 0.00751
15300 5 0.00751
16 4 0.00128
33 4 0.00207
63 4 0.00112
85 4 0.00205
1820 4 0.00595
2960 4 0.00597
4810 4 0.00599
12000 4 0.00601
41400 4 0.00602
3 3 0.000715
4 3 0.000752
9 3 0.000931
19 3 0.00121
21 3 0.00103
27 3 0.00155
84 3 0.00138
86 3 0.000981
95 3 0.00189
918 3 0.00443
3060 3 0.00451
3200 3 0.00449
10600 3 0.0045
10700 3 0.0045
11300 3 0.00451
22100 3 0.00452
25200 3 0.00451
44700 3 0.00452
59800 3 0.00452
80400 3 0.00452
11 2 0.000486
15 2 0.000676
28 2 0.00098
29 2 0.00083
37 2 0.000543
41 2 0.000564
42 2 0.000832
47 2 0.000651
48 2 0.000525
51 2 0.00058
58 2 0.00136
65 2 0.00105
78 2 0.000644
94 2 0.00209
97 2 0.000917
98 2 0.00131
100 2 0.00127
114 2 0.00156
118 2 0.00139
120 2 0.00104
123 2 0.0012
126 2 0.00113
128 2 0.00148
130 2 0.000753
170 2 0.00117
178 2 0.00178
215 2 0.0019
371 2 0.00282
2640 2 0.003
3160 2 0.00299
3460 2 0.003
7320 2 0.00301
7840 2 0.00301
9350 2 0.00301
9860 2 0.00301
12600 2 0.00301
15000 2 0.00301
15600 2 0.00301
17000 2 0.00301
17600 2 0.00301
20000 2 0.00301
26900 2 0.00301
30200 2 0.00302
32500 2 0.00301
38400 2 0.00301
45200 2 0.00302
46000 2 0.00301
59300 2 0.00301
68600 2 0.00301
76300 2 0.00301
79200 2 0.00301
81200 2 0.00301
96500 2 0.00302
97400 2 0.00302
98200 2 0.00302
98400 2 0.00302
133000 2 0.00302
142000 2 0.00302
174000 2 0.00302
232000 2 0.00302
239000 2 0.00302
258000 2 0.00302
279000 2 0.00302
285000 2 0.00302
290000 2 0.00302
310000 2 0.00302
310000 2 0.00302
315000 2 0.00302
320000 2 0.00302
326000 2 0.00302
327000 2 0.00302
333000 2 0.00302
1 1 0.000245
2 1 0.000164
6 1 0.00023
7 1 0.000197
10 1 0.000503
13 1 0.000482
22 1 0.000303
24 1 0.000275
26 1 0.000375
31 1 0.00018
32 1 0.000479
35 1 0.000263
40 1 0.000242
43 1 0.000314
55 1 0.000232
56 1 0.00113
59 1 0.000582
60 1 0.00059
64 1 0.00066
71 1 0.00035
73 1 0.000676
74 1 0.000483
77 1 0.000531
81 1 0.000352
82 1 0.000619
83 1 0.000551
87 1 0.000517
90 1 0.000333
102 1 0.00034
103 1 0.000383
104 1 0.000682
106 1 0.000494
107 1 0.000743
110 1 0.000662
112 1 0.000766
113 1 0.000522
116 1 0.000375
117 1 0.000553
122 1 0.000541
125 1 0.000718
127 1 0.000547
133 1 0.000298
136 1 0.00081
137 1 0.000633
140 1 0.000391
146 1 0.000725
147 1 0.000309
152 1 0.000422
153 1 0.000517
155 1 0.000724
156 1 0.000675
158 1 0.000626
159 1 0.000692
161 1 0.000513
162 1 0.000552
163 1 0.000522
164 1 0.00115
166 1 0.000755
169 1 0.000726
179 1 0.000799
181 1 0.000717
185 1 0.000696
200 1 0.000672
203 1 0.000831
210 1 0.00123
214 1 0.00103
216 1 0.00107
221 1 0.00111
227 1 0.00104
228 1 0.00112
230 1 0.00122
238 1 0.00106
245 1 0.000795
252 1 0.00107
266 1 0.00119
272 1 0.000976
292 1 0.0011
293 1 0.00127
318 1 0.00118
331 1 0.00128
345 1 0.00124
409 1 0.00144
733 1 0.00147
808 1 0.00149
864 1 0.00146
1090 1 0.00148
1100 1 0.00148
2440 1 0.00149
2920 1 0.0015
3310 1 0.00149
3720 1 0.0015
4370 1 0.0015
5720 1 0.0015
6300 1 0.0015
6790 1 0.0015
8930 1 0.0015
9080 1 0.0015
10500 1 0.00151
14200 1 0.0015
14500 1 0.0015
15000 1 0.00151
17800 1 0.00151
18300 1 0.00151
18400 1 0.00151
18400 1 0.00151
18500 1 0.00151
18500 1 0.00151
18600 1 0.00151
20400 1 0.00151
25800 1 0.00151
26400 1 0.00151
27400 1 0.00151
27900 1 0.0015
35400 1 0.00151
42100 1 0.00151
46100 1 0.00151
50900 1 0.00151
51800 1 0.00151
52300 1 0.00151
53300 1 0.00151
53400 1 0.00151
54100 1 0.00151
59000 1 0.00151
59800 1 0.00151
62500 1 0.00151
65200 1 0.00151
67500 1 0.00151
68600 1 0.00151
69200 1 0.00151
80000 1 0.00151
81900 1 0.00151
83000 1 0.00151
83500 1 0.00151
84500 1 0.00151
92100 1 0.00151
103000 1 0.00151
108000 1 0.00151
113000 1 0.00151
121000 1 0.00151
138000 1 0.00151
140000 1 0.00151
140000 1 0.00151
151000 1 0.00151
156000 1 0.00151
158000 1 0.00151
165000 1 0.00151
166000 1 0.00151
173000 1 0.00151
186000 1 0.00151
192000 1 0.00151
2e+05 1 0.00151
202000 1 0.00151
206000 1 0.00151
208000 1 0.00151
234000 1 0.00151
246000 1 0.00151
247000 1 0.00151
254000 1 0.00151
256000 1 0.00151
266000 1 0.00151
270000 1 0.00151
271000 1 0.00151
272000 1 0.00151
276000 1 0.00151
288000 1 0.00151
291000 1 0.00151
302000 1 0.00151
307000 1 0.00151
310000 1 0.00151
319000 1 0.00151
320000 1 0.00151
325000 1 0.00151
336000 1 0.00151
338000 1 0.00151
339000 1 0.00151
340000 1 0.00151