Cluster no. 151

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Cluster is part of supercluster: 71

Cluster characteristics:

size 9452
size_real 9452
ecount 113292
supercluster 71
annotations_summary 11.27% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
5.42% Class_I/LTR/Ty1_copia/SIRE:Ty1-RH
3.41% Class_I/LTR/Ty1_copia/Ivana:Ty1-RT
2.61% Class_I/LTR/Ty1_copia/Ivana:Ty1-RH
0.88% Class_I/LTR/Ty1_copia/Ale:Ty1-RH
0.78% Class_I/LTR/Ty1_copia/SIRE:Ty1-INT
0.71% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT
0.66% Class_I/LTR/Ty1_copia/Alesia:Ty1-RT
0.66% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-RT
0.65% Class_I/LTR/Ty1_copia/Tork:Ty1-RT
0.60% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
0.52% Class_I/LTR/Ty1_copia/Ikeros:Ty1-RT
0.31% organelle/mitochondria
0.30% Class_I/LTR/Ty1_copia/Tork:Ty1-INT
0.20% Class_I/LTR/Ty1_copia/TAR:Ty1-RT
0.12% Class_I/LTR/Ty1_copia/SIRE:Ty1-PROT
0.12% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-RH
0.11% Class_I/LTR/Ty1_copia/Tork:Ty1-RH
0.04% Class_I/LTR/Ty1_copia/Ivana:Ty1-PROT
0.04% Class_I/LTR/Ty1_copia/Bryco:Ty1-RT
0.04% Class_I/LTR/Ty1_copia/Gymco-I:Ty1-INT
0.03% Class_I/LTR/Ty1_copia/Bryco:Ty1-RH
0.03% Class_I/LTR/Ty1_copia/Alesia:Ty1-RH
0.03% Class_I/LTR/Ty1_copia/Angela:Ty1-INT
0.02% Class_I/LTR/Ty1_copia/Tork:Ty1-PROT
0.02% Class_I/LTR/Ty1_copia/Angela:Ty1-RT
0.02% Class_I/LTR/Ty1_copia/Gymco-I:Ty1-RT
0.02% Class_I/LTR/Ty1_copia/Ty1-outgroup:Ty1-INT
0.01% Class_I/LTR/Ty1_copia/Alesia:Ty1-INT
0.01% organelle/plastid
0.01% Class_I/LTR/Ty1_copia/Bryco:Ty1-INT
0.01% Class_I/LTR/Ty1_copia/Ikeros:Ty1-INT
pair_completeness 0.689667500893815
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0101565806178587
satellite_probability 1.56390811228182e-21
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 29 0.00307
plastid plastid 1 0.00011
Alesia Ty1-INT Alesia Ty1-INT 1 0.00011
Angela Ty1-INT Angela Ty1-INT 3 0.00032
Bryco Ty1-INT Bryco Ty1-INT 1 0.00011
Gymco-I Ty1-INT Gymco-I Ty1-INT 4 0.00042
Ikeros Ty1-INT Ikeros Ty1-INT 1 0.00011
Ivana Ty1-INT Ivana Ty1-INT 67 0.00709
SIRE Ty1-INT SIRE Ty1-INT 74 0.00783
Tork Ty1-INT Tork Ty1-INT 28 0.00296
Ty1-outgroup Ty1-INT Ty1-outgroup Ty1-INT 2 0.00021
Ivana Ty1-PROT Ivana Ty1-PROT 4 0.00042
SIRE Ty1-PROT SIRE Ty1-PROT 11 0.00116
Tork Ty1-PROT Tork Ty1-PROT 2 0.00021
Ale Ty1-RH Ale Ty1-RH 83 0.00878
Alesia Ty1-RH Alesia Ty1-RH 3 0.00032
Bryco Ty1-RH Bryco Ty1-RH 3 0.00032
Gymco-II Ty1-RH Gymco-II Ty1-RH 11 0.00116
Ivana Ty1-RH Ivana Ty1-RH 247 0.02613
SIRE Ty1-RH SIRE Ty1-RH 512 0.05417
Tork Ty1-RH Tork Ty1-RH 10 0.00106
Ale Ty1-RT Ale Ty1-RT 57 0.00603
Alesia Ty1-RT Alesia Ty1-RT 62 0.00656
Angela Ty1-RT Angela Ty1-RT 2 0.00021
Bryco Ty1-RT Bryco Ty1-RT 4 0.00042
Gymco-I Ty1-RT Gymco-I Ty1-RT 2 0.00021
Gymco-II Ty1-RT Gymco-II Ty1-RT 62 0.00656
Ikeros Ty1-RT Ikeros Ty1-RT 49 0.00518
Ivana Ty1-RT Ivana Ty1-RT 322 0.03407
SIRE Ty1-RT SIRE Ty1-RT 1065 0.11267
TAR Ty1-RT TAR Ty1-RT 19 0.00201
Tork Ty1-RT Tork Ty1-RT 61 0.00645

clusters with similarity:

Cluster Number of similarity hits
32 417
17 118
111 20
231 18
81 11
223 10
159 6
3 4
51 4
97 3
6 1
23 1
78 1
98 1
110 1
186 1
245 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
111 91 0.0271
231 76 0.0722
159 71 0.043
223 37 0.031
17 23 0.00353
32 22 0.00959
6 11 0.00241
2 10 0.00158
51 10 0.00274
326 10 0.0102
30 9 0.00205
411 9 0.01
78 7 0.00212
806 7 0.00786
4 6 0.00143
9 6 0.00175
23 6 0.00191
66 6 0.00167
3 5 0.00114
22 5 0.00143
102 5 0.00159
153 5 0.00234
811 5 0.00563
2990 5 0.00571
4000 5 0.00572
9920 5 0.00574
19 4 0.00149
34 4 0.00126
85 4 0.00185
122 4 0.00195
126 4 0.00202
139 4 0.00206
158 4 0.00222
2940 4 0.00458
3500 4 0.00458
11200 4 0.00459
22500 4 0.0046
7 3 0.000568
14 3 0.000727
16 3 0.000901
20 3 0.000712
41 3 8e-04
48 3 0.000747
86 3 0.000919
97 3 0.00126
98 3 0.00173
100 3 0.00168
132 3 0.00188
134 3 0.00143
161 3 0.00139
165 3 0.00148
181 3 0.00187
242 3 0.00226
6890 3 0.00344
8440 3 0.00344
8580 3 0.00345
9370 3 0.00344
10400 3 0.00344
16100 3 0.00344
18700 3 0.00344
42000 3 0.00345
45000 3 0.00345
53900 3 0.00345
62600 3 0.00345
76700 3 0.00345
24 2 0.00052
25 2 0.000758
26 2 0.000697
31 2 0.000347
35 2 0.000499
36 2 0.000846
38 2 0.000987
42 2 0.000766
50 2 0.000817
59 2 0.00104
68 2 0.000881
74 2 0.000878
80 2 0.000919
84 2 0.000842
90 2 0.000623
104 2 0.0012
109 2 0.0013
124 2 0.00115
130 2 0.000698
131 2 0.00178
143 2 0.000984
145 2 0.000889
148 2 0.00106
154 2 0.00143
160 2 0.00118
167 2 0.000918
178 2 0.00151
186 2 0.000945
189 2 0.0011
200 2 0.00118
245 2 0.00137
264 2 0.00183
724 2 0.00224
3560 2 0.00229
6510 2 0.00229
8180 2 0.0023
9500 2 0.00229
10100 2 0.00229
15800 2 0.00229
17700 2 0.0023
24500 2 0.0023
25100 2 0.0023
29200 2 0.0023
32700 2 0.0023
58900 2 0.0023
62700 2 0.0023
67700 2 0.0023
83800 2 0.0023
105000 2 0.0023
123000 2 0.0023
170000 2 0.0023
186000 2 0.0023
211000 2 0.0023
252000 2 0.0023
266000 2 0.0023
279000 2 0.0023
289000 2 0.0023
293000 2 0.0023
311000 2 0.0023
5 1 0.000419
10 1 0.000455
11 1 0.000232
13 1 0.000439
18 1 0.00038
37 1 0.000257
40 1 0.000231
44 1 0.000264
45 1 0.00029
47 1 0.000305
49 1 0.000399
57 1 0.000536
58 1 0.000598
60 1 0.000526
62 1 0.000288
63 1 0.000265
69 1 0.00053
70 1 0.000588
71 1 0.000327
75 1 0.000265
77 1 0.000478
87 1 0.000467
88 1 0.000321
92 1 0.000683
94 1 0.000861
95 1 0.000557
96 1 0.000545
101 1 0.000426
103 1 0.000355
107 1 0.000645
110 1 0.000583
112 1 0.000662
113 1 0.000471
114 1 0.000673
115 1 0.000388
116 1 0.000348
117 1 0.000497
119 1 0.000716
120 1 0.00047
123 1 0.000535
128 1 0.000643
137 1 0.00056
140 1 0.000362
144 1 0.000735
147 1 0.000291
152 1 0.000388
156 1 0.000592
157 1 0.000615
164 1 0.000927
170 1 0.000521
171 1 0.000589
172 1 0.000497
174 1 0.000523
179 1 0.000686
185 1 0.000609
191 1 0.000559
195 1 0.000813
197 1 0.000567
198 1 0.000787
202 1 0.000851
203 1 0.00071
205 1 0.000671
206 1 0.00076
212 1 0.000836
221 1 0.000906
226 1 0.000932
229 1 0.000678
238 1 0.00087
239 1 0.000853
241 1 0.000873
249 1 9e-04
250 1 0.000979
262 1 0.00108
271 1 0.00103
282 1 0.000979
294 1 0.000973
302 1 0.00103
315 1 0.00107
339 1 0.00105
343 1 0.0011
417 1 0.00108
453 1 0.00107
456 1 0.00111
465 1 0.00108
480 1 0.00112
517 1 0.00113
561 1 0.00113
595 1 0.00111
638 1 0.00111
747 1 0.00113
867 1 0.00113
918 1 0.00113
1300 1 0.00114
2100 1 0.00114
3010 1 0.00114
3710 1 0.00114
4570 1 0.00114
4890 1 0.00114
5150 1 0.00115
6060 1 0.00115
6160 1 0.00115
6500 1 0.00115
7100 1 0.00115
7120 1 0.00115
7230 1 0.00115
7430 1 0.00115
8030 1 0.00115
8220 1 0.00115
9230 1 0.00115
9600 1 0.00115
10000 1 0.00115
10200 1 0.00115
10800 1 0.00115
10800 1 0.00115
11600 1 0.00115
11600 1 0.00115
13600 1 0.00115
13700 1 0.00115
14200 1 0.00115
15600 1 0.00115
16500 1 0.00115
16700 1 0.00115
17500 1 0.00115
18100 1 0.00115
18500 1 0.00115
20300 1 0.00115
20800 1 0.00115
21100 1 0.00115
21200 1 0.00115
21400 1 0.00115
22000 1 0.00115
22300 1 0.00115
23300 1 0.00115
23700 1 0.00115
24500 1 0.00115
24800 1 0.00115
27200 1 0.00115
28000 1 0.00115
28600 1 0.00115
28600 1 0.00115
30500 1 0.00115
30800 1 0.00115
31100 1 0.00115
31400 1 0.00115
32300 1 0.00115
32700 1 0.00115
33400 1 0.00115
34800 1 0.00115
35100 1 0.00115
36300 1 0.00115
39400 1 0.00115
39800 1 0.00115
39900 1 0.00115
39900 1 0.00115
40600 1 0.00115
42100 1 0.00115
42700 1 0.00115
45400 1 0.00115
45600 1 0.00115
47900 1 0.00115
49300 1 0.00115
49600 1 0.00115
49700 1 0.00115
50200 1 0.00115
50800 1 0.00115
53100 1 0.00115
54100 1 0.00115
55600 1 0.00115
57100 1 0.00115
61300 1 0.00115
62300 1 0.00115
64200 1 0.00115
64600 1 0.00115
65000 1 0.00115
66700 1 0.00115
66700 1 0.00115
67600 1 0.00115
67700 1 0.00115
68000 1 0.00115
69400 1 0.00115
70100 1 0.00115
71600 1 0.00115
73600 1 0.00115
73600 1 0.00115
75500 1 0.00115
77100 1 0.00115
77700 1 0.00115
78200 1 0.00115
78800 1 0.00115
79700 1 0.00115
81800 1 0.00115
82200 1 0.00115
82600 1 0.00115
101000 1 0.00115
103000 1 0.00115
106000 1 0.00115
111000 1 0.00115
118000 1 0.00115
118000 1 0.00115
118000 1 0.00115
121000 1 0.00115
127000 1 0.00115
133000 1 0.00115
139000 1 0.00115
139000 1 0.00115
144000 1 0.00115
145000 1 0.00115
145000 1 0.00115
150000 1 0.00115
150000 1 0.00115
156000 1 0.00115
159000 1 0.00115
162000 1 0.00115
163000 1 0.00115
167000 1 0.00115
174000 1 0.00115
177000 1 0.00115
178000 1 0.00115
178000 1 0.00115
186000 1 0.00115
197000 1 0.00115
202000 1 0.00115
205000 1 0.00115
208000 1 0.00115
220000 1 0.00115
228000 1 0.00115
231000 1 0.00115
250000 1 0.00115
255000 1 0.00115
256000 1 0.00115
273000 1 0.00115
274000 1 0.00115
276000 1 0.00115
277000 1 0.00115
284000 1 0.00115
284000 1 0.00115
287000 1 0.00115
288000 1 0.00115
290000 1 0.00115
292000 1 0.00115
293000 1 0.00115
294000 1 0.00115
303000 1 0.00115
304000 1 0.00115
309000 1 0.00115
311000 1 0.00115
319000 1 0.00115
330000 1 0.00115
331000 1 0.00115
335000 1 0.00115
337000 1 0.00115
343000 1 0.00115
347000 1 0.00115

CL151 ----> CL111

image

No. of shared pairs: :91

CL151 ----> CL231

image

No. of shared pairs: :76

CL151 ----> CL159

image

No. of shared pairs: :71

CL151 ----> CL223

image

No. of shared pairs: :37

CL151 ----> CL17

image

No. of shared pairs: :23

CL151 ----> CL32

image

No. of shared pairs: :22

CL151 ----> CL6

image

No. of shared pairs: :11

CL151 ----> CL2

image

No. of shared pairs: :10

CL151 ----> CL51

image

No. of shared pairs: :10

CL151 ----> CL326

image

No. of shared pairs: :10