Cluster no. 153

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Cluster is part of supercluster: 20

Cluster characteristics:

size 9398
size_real 9398
ecount 1475491
supercluster 20
annotations_summary 0.72% Class_I/LTR/Ty1_copia/Tork:Ty1-GAG
0.01% Class_I/LTR/Ty1_copia/Tork:Ty1-INT
0.01% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RH
0.01% Class_I/LTR/Ty1_copia/Tork:Ty1-RH
pair_completeness 0.574204355108878
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00808682698446478
satellite_probability 4.79804177716536e-21
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Tork Ty1-GAG Tork Ty1-GAG 68 0.00724
Ale Ty1-INT Ale Ty1-INT 1 0.00011
Tork Ty1-INT Tork Ty1-INT 1 0.00011
Tork Ty1-RH Tork Ty1-RH 1 0.00011
Athila Ty3-RH Athila Ty3-RH 1 0.00011

clusters with similarity:

Cluster Number of similarity hits
104 3840
95 25
302 7
59 2
4 1
12 1
24 1
40 1
52 1
77 1
87 1
106 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
95 450 0.205
104 450 0.217
17 16 0.00231
12 13 0.00249
3 12 0.0025
7 12 0.00211
48 12 0.00272
24 10 0.00235
26 10 0.00305
34 10 0.0028
44 10 0.00239
4 9 0.00196
302 9 0.00654
9 8 0.00209
47 8 0.00217
2 7 0.00104
5 7 0.00251
14 7 0.00154
20 7 0.00152
45 7 0.00182
63 7 0.00167
66 7 0.00175
11 6 0.00127
18 6 0.00198
22 6 0.00154
28 6 0.00227
31 6 0.000973
32 6 0.00222
43 6 0.00158
54 6 0.00268
120 6 0.00237
15 5 0.0014
16 5 0.00134
21 5 0.00142
25 5 0.00164
27 5 0.00196
40 5 0.00106
77 5 0.00201
126 5 0.0021
151 5 0.00234
161 5 0.00196
168 5 0.00208
6 4 0.000805
10 4 0.00154
13 4 0.00149
19 4 0.00129
29 4 0.00133
30 4 0.000835
37 4 0.000932
42 4 0.00133
70 4 0.0019
87 4 0.00157
90 4 0.00111
109 4 0.00205
113 4 0.00158
134 4 0.0016
147 4 0.00104
148 4 0.00175
197 4 0.00185
23 3 0.000847
36 3 0.00108
38 3 0.00123
39 3 0.00113
51 3 0.000739
52 3 0.000984
53 3 0.000738
55 3 0.000611
61 3 0.00105
69 3 0.00131
71 3 0.000866
76 3 0.00117
84 3 0.00108
88 3 0.000852
89 3 0.00118
93 3 0.00149
103 3 0.000932
105 3 0.00112
106 3 0.00114
111 3 0.000798
115 3 0.00101
122 3 0.00122
128 3 0.00153
132 3 0.0015
138 3 0.00151
141 3 0.00121
152 3 0.00101
156 3 0.00143
157 3 0.00148
179 3 0.00161
205 3 0.00158
239 3 0.0019
390 3 0.00228
1 2 0.000426
33 2 0.000788
41 2 0.000481
49 2 0.000687
50 2 0.000701
56 2 0.00134
58 2 0.000964
59 2 0.00086
67 2 0.000595
74 2 0.000746
75 2 0.000479
78 2 0.000539
79 2 0.000554
80 2 0.000775
82 2 0.000899
86 2 0.000546
92 2 0.00107
96 2 0.000893
98 2 0.000938
101 2 0.000727
114 2 0.00106
116 2 0.00061
121 2 0.00113
123 2 0.00088
127 2 0.000821
130 2 0.000612
139 2 0.000853
142 2 0.000964
150 2 0.000898
154 2 0.00111
160 2 0.000952
165 2 0.000823
167 2 0.000775
171 2 0.000953
172 2 0.000828
181 2 0.000998
185 2 0.000978
186 2 0.000793
211 2 0.00113
219 2 0.00128
231 2 0.00137
244 2 0.00145
276 2 0.00121
297 2 0.00144
33800 2 0.00157
42800 2 0.00157
128000 2 0.00157
186000 2 0.00157
348000 2 0.00157
348000 2 0.00157
8 1 0.000356
46 1 0.000359
57 1 0.000441
60 1 0.000434
64 1 0.000471
68 1 0.000374
72 1 4e-04
73 1 0.000479
81 1 0.00029
85 1 0.000391
91 1 0.00052
94 1 0.000639
97 1 0.000358
99 1 0.000518
102 1 0.000281
107 1 0.000512
108 1 0.000487
110 1 0.000472
117 1 0.000414
118 1 0.000487
125 1 5e-04
133 1 0.000252
137 1 0.000457
140 1 0.000316
149 1 0.000517
155 1 0.000503
158 1 0.000453
159 1 0.000487
162 1 0.000413
163 1 0.000396
169 1 0.000504
170 1 0.000431
173 1 0.000571
174 1 0.000432
175 1 0.000542
178 1 0.000578
182 1 0.00049
183 1 0.000493
189 1 0.000451
196 1 0.000434
202 1 0.000634
204 1 0.000634
206 1 0.000582
208 1 0.000601
209 1 0.00068
212 1 0.000626
213 1 0.000428
214 1 0.000632
218 1 0.000678
222 1 0.000612
224 1 0.000738
225 1 0.00068
229 1 0.000532
230 1 0.000701
232 1 0.000602
235 1 0.000526
241 1 0.000646
245 1 0.000535
246 1 0.00074
252 1 0.000649
254 1 0.000711
255 1 0.000585
259 1 0.000677
263 1 0.000569
267 1 0.000608
269 1 0.000713
279 1 0.000664
285 1 0.000715
309 1 0.000761
318 1 0.000687
336 1 0.000731
344 1 0.000736
346 1 0.000741
379 1 0.000767
418 1 0.000752
421 1 0.000776
453 1 0.000745
458 1 0.000756
483 1 0.000764
510 1 0.000758
514 1 0.000758
523 1 0.000769
531 1 0.000767
540 1 0.000777
554 1 0.000767
778 1 0.000776
829 1 0.000776
991 1 0.000777
1000 1 0.000776
1010 1 0.000772
1110 1 0.000775
1120 1 0.000778
1170 1 0.000778
1270 1 0.00078
1360 1 0.000779
1370 1 0.000781
1380 1 0.000781
1400 1 0.000782
1430 1 0.000779
1670 1 0.00078
1860 1 0.000781
1870 1 0.000779
1910 1 0.000779
2690 1 0.000782
2710 1 0.000784
2920 1 0.000782
3220 1 0.000782
3560 1 0.000784
4160 1 0.000783
4590 1 0.000784
4740 1 0.000783
5220 1 0.000784
5630 1 0.000783
6140 1 0.000784
6860 1 0.000784
7340 1 0.000785
9160 1 0.000784
11300 1 0.000784
11400 1 0.000784
11500 1 0.000785
12000 1 0.000785
12400 1 0.000786
13500 1 0.000785
14400 1 0.000785
15300 1 0.000786
18500 1 0.000786
22200 1 0.000786
22300 1 0.000785
28300 1 0.000785
28700 1 0.000786
29200 1 0.000786
30700 1 0.000786
34700 1 0.000786
37200 1 0.000786
40700 1 0.000786
43100 1 0.000786
44900 1 0.000786
45000 1 0.000786
52200 1 0.000786
55700 1 0.000786
56900 1 0.000786
59200 1 0.000786
61700 1 0.000786
62600 1 0.000786
73800 1 0.000786
75000 1 0.000786
75700 1 0.000786
77400 1 0.000786
79100 1 0.000786
84900 1 0.000786
88100 1 0.000786
112000 1 0.000786
114000 1 0.000786
115000 1 0.000786
117000 1 0.000786
121000 1 0.000786
130000 1 0.000786
131000 1 0.000786
133000 1 0.000786
134000 1 0.000786
136000 1 0.000786
136000 1 0.000786
138000 1 0.000786
147000 1 0.000786
148000 1 0.000786
149000 1 0.000786
149000 1 0.000786
150000 1 0.000786
150000 1 0.000786
161000 1 0.000786
161000 1 0.000786
162000 1 0.000786
162000 1 0.000786
165000 1 0.000786
171000 1 0.000786
171000 1 0.000786
181000 1 0.000786
186000 1 0.000786
212000 1 0.000786
216000 1 0.000786
233000 1 0.000786
240000 1 0.000786
244000 1 0.000786
245000 1 0.000786
247000 1 0.000786
249000 1 0.000786
258000 1 0.000786
266000 1 0.000786
271000 1 0.000786
277000 1 0.000786
278000 1 0.000786
282000 1 0.000786
289000 1 0.000786
306000 1 0.000786
334000 1 0.000786

CL153 ----> CL95

image

No. of shared pairs: :450

CL153 ----> CL104

image

No. of shared pairs: :450

CL153 ----> CL17

image

No. of shared pairs: :16

CL153 ----> CL12

image

No. of shared pairs: :13

CL153 ----> CL3

image

No. of shared pairs: :12

CL153 ----> CL7

image

No. of shared pairs: :12

CL153 ----> CL48

image

No. of shared pairs: :12

CL153 ----> CL24

image

No. of shared pairs: :10

CL153 ----> CL26

image

No. of shared pairs: :10

CL153 ----> CL34

image

No. of shared pairs: :10

CL153 ----> CL44

image

No. of shared pairs: :10