Cluster no. 155

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Cluster is part of supercluster: 16

Cluster characteristics:

size 9298
size_real 9298
ecount 2473676
supercluster 16
annotations_summary 39.51% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT
4.24% Class_I/LTR/Ty1_copia/Tork:Ty1-INT
4.23% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-INT
2.04% Class_I/LTR/Ty1_copia/TAR:Ty1-INT
0.82% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.29% Class_I/LTR/Ty1_copia/Ikeros:Ty1-INT
0.25% Class_I/LTR/Ty1_copia/Bryco:Ty1-INT
0.23% Class_I/LTR/Ty1_copia/Ty1-outgroup:Ty1-INT
0.17% Class_I/LTR/Ty1_copia/SIRE:Ty1-INT
0.17% Class_I/LTR/Ty1_copia/Angela:Ty1-INT
0.16% organelle/mitochondria
0.06% Class_I/LTR/Ty1_copia/Gymco-I:Ty1-INT
0.06% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
0.05% Class_I/LTR/Ty1_copia/Osser:Ty1-INT
0.03% Class_I/LTR/Ty1_copia/Alesia:Ty1-INT
pair_completeness 0.732116244411326
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00322650032265003
satellite_probability 9.81425038973844e-23
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 15 0.00161
Ale Ty1-INT Ale Ty1-INT 76 0.00817
Alesia Ty1-INT Alesia Ty1-INT 3 0.00032
Angela Ty1-INT Angela Ty1-INT 16 0.00172
Bryco Ty1-INT Bryco Ty1-INT 23 0.00247
Gymco-I Ty1-INT Gymco-I Ty1-INT 6 0.00065
Gymco-II Ty1-INT Gymco-II Ty1-INT 393 0.04227
Ikeros Ty1-INT Ikeros Ty1-INT 27 0.00290
Ivana Ty1-INT Ivana Ty1-INT 3674 0.39514
Osser Ty1-INT Osser Ty1-INT 5 0.00054
SIRE Ty1-INT SIRE Ty1-INT 16 0.00172
TAR Ty1-INT TAR Ty1-INT 190 0.02043
Tork Ty1-INT Tork Ty1-INT 394 0.04237
Ty1-outgroup Ty1-INT Ty1-outgroup Ty1-INT 21 0.00226
SIRE Ty1-RT SIRE Ty1-RT 6 0.00065

clusters with similarity:

Cluster Number of similarity hits
107 27200
132 14900
161 2
29 1
85 1
102 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
107 591 0.422
132 543 0.375
85 12 0.00597
17 7 0.0011
1 4 0.000965
3 4 0.00094
31 4 0.000712
40 4 0.000956
89 4 0.002
102 4 0.00133
6 3 0.00068
15 3 0.000995
16 3 0.000943
29 3 0.00122
33 3 0.00151
42 3 0.00122
50 3 0.0013
122 3 0.00157
7 2 0.00039
12 2 0.000428
13 2 0.000938
19 2 0.000787
24 2 0.000541
25 2 0.000803
27 2 0.001
43 2 0.000618
45 2 0.000606
48 2 0.000517
66 2 0.000579
69 2 0.00115
81 2 0.00069
84 2 0.000898
87 2 0.001
88 2 0.000673
90 2 0.000653
97 2 0.000893
98 2 0.00127
119 2 0.0016
160 2 0.00129
179 2 0.00153
2 1 0.000162
4 1 0.000247
8 1 0.000443
10 1 0.000489
21 1 0.000336
23 1 0.000334
26 1 0.000367
28 1 0.000477
30 1 0.000236
36 1 0.000451
41 1 0.000278
44 1 0.000275
46 1 0.000447
53 1 0.000285
55 1 0.000229
56 1 0.00106
57 1 0.000583
58 1 0.000657
59 1 0.000564
60 1 0.000571
63 1 0.000276
64 1 0.000636
73 1 0.000651
75 1 0.000276
76 1 0.000494
77 1 0.000515
78 1 0.000316
79 1 0.000327
86 1 0.000321
91 1 0.000729
92 1 0.000761
93 1 0.000681
94 1 0.000987
95 1 0.000608
101 1 0.000455
106 1 0.00048
120 1 0.000505
121 1 0.00082
125 1 0.00069
128 1 0.000711
130 1 0.000368
135 1 0.000602
142 1 0.000656
143 1 0.000531
144 1 0.000825
147 1 0.000304
149 1 0.000724
153 1 0.000503
154 1 0.000798
163 1 0.000506
164 1 0.00108
167 1 0.000493
169 1 0.000697
171 1 0.000646
173 1 0.000834
181 1 0.000688
200 1 0.000647
201 1 0.00122
214 1 0.000971
224 1 0.00124
238 1 0.001
249 1 0.00104
250 1 0.00115
251 1 0.00112
275 1 0.00128
278 1 0.00118
302 1 0.00121
326 1 0.0012
336 1 0.00122
540 1 0.00136
697 1 0.00136
970 1 0.00136
1040 1 0.00137
1500 1 0.00137
1610 1 0.00138
2010 1 0.00138
2870 1 0.00138
6090 1 0.00138
6340 1 0.00138
8400 1 0.00138
11200 1 0.00138
16300 1 0.00139
17300 1 0.00139
24300 1 0.00139
38300 1 0.00139
49200 1 0.00139
60300 1 0.00139
65700 1 0.00139
134000 1 0.00139
136000 1 0.00139
184000 1 0.00139
196000 1 0.00139
198000 1 0.00139
250000 1 0.00139

CL155 ----> CL107

image

No. of shared pairs: :591

CL155 ----> CL132

image

No. of shared pairs: :543

CL155 ----> CL85

image

No. of shared pairs: :12