Cluster no. 156

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Cluster is part of supercluster: 73

Cluster characteristics:

size 9158
size_real 9158
ecount 183168
supercluster 73
annotations_summary 0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-PROT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-INT
pair_completeness 0.696240044452676
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000545970735968552
satellite_probability 1.64859681984477e-22
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
TatIII Ty3-INT TatIII Ty3-INT 1 0.00011
TatIII Ty3-PROT TatIII Ty3-PROT 1 0.00011

clusters with similarity:

Cluster Number of similarity hits
35 518
31 467
106 17
4 16
229 4
40 2
9 1
16 1
34 1
41 1
89 1
99 1
113 1
120 1
276 1
323 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
35 218 0.0551
106 141 0.0646
31 41 0.00717
43 24 0.00719
4 15 0.00361
838 13 0.0154
24 12 0.00316
47 11 0.0034
17 10 0.00155
157 9 0.00571
11 8 0.00187
16 8 0.00244
130 8 0.00284
2740 8 0.00966
7 7 0.00134
20 7 0.00168
80 7 0.00329
90 7 0.00221
3 6 0.00138
9 6 0.00178
12 6 0.00126
66 6 0.00169
3680 6 0.00726
1 5 0.00118
6 5 0.00111
15 5 0.0016
26 5 0.00177
28 5 0.00227
34 5 0.00161
89 5 0.00238
99 5 0.00338
163 5 0.00241
2 4 0.000638
14 4 0.00098
21 4 0.0013
27 4 0.00191
29 4 0.00156
44 4 0.00107
45 4 0.00118
48 4 0.00101
55 4 0.000897
63 4 0.00107
67 4 0.00138
85 4 0.0019
115 4 0.00158
120 4 0.00192
229 4 0.0028
694 4 0.00477
19 3 0.00114
22 3 0.000868
23 3 0.00097
33 3 0.00144
42 3 0.00117
49 3 0.00122
69 3 0.00163
72 3 0.00146
74 3 0.00135
75 3 0.000805
87 3 0.00143
98 3 0.00178
108 3 0.00187
117 3 0.00153
128 3 0.00199
134 3 0.00147
150 3 0.00169
153 3 0.00143
18900 3 0.00365
52900 3 0.00365
82100 3 0.00365
30 2 0.000461
32 2 0.00089
37 2 0.00052
38 2 0.00101
39 2 0.000903
40 2 0.000467
41 2 0.00054
62 2 0.000584
77 2 0.000979
81 2 0.000666
83 2 0.00101
84 2 0.000859
96 2 0.00112
102 2 0.000645
103 2 0.000722
104 2 0.00123
110 2 0.0012
113 2 0.000964
132 2 0.00129
138 2 0.0013
140 2 0.000736
148 2 0.00109
171 2 0.00121
174 2 0.00107
176 2 0.00154
179 2 0.00142
182 2 0.00126
190 2 0.00128
196 2 0.00108
201 2 0.00217
222 2 0.00169
223 2 0.00174
235 2 0.00138
245 2 0.00141
264 2 0.00191
323 2 0.00225
436 2 0.00239
13100 2 0.00243
15700 2 0.00243
36900 2 0.00244
38800 2 0.00244
348000 2 0.00244
5 1 0.000427
13 1 0.000448
25 1 0.000386
36 1 0.000432
50 1 0.000416
51 1 0.000277
53 1 0.000277
54 1 0.000561
60 1 0.00054
65 1 0.000483
70 1 0.000606
76 1 0.000471
78 1 0.000307
79 1 0.000316
88 1 0.000326
91 1 0.000679
97 1 0.000427
100 1 0.000577
109 1 0.000669
111 1 0.000302
114 1 0.000696
118 1 0.000625
121 1 0.000758
123 1 0.000549
125 1 0.000645
126 1 0.000519
137 1 0.000575
141 1 0.000491
142 1 0.000616
147 1 0.000295
149 1 0.000675
151 1 0.000592
152 1 0.000396
159 1 0.000623
168 1 0.000513
169 1 0.000651
170 1 0.000534
178 1 0.000782
181 1 0.000644
187 1 0.000695
194 1 0.001
195 1 0.000846
197 1 0.000582
198 1 0.000818
207 1 0.000929
209 1 0.00098
211 1 0.000757
226 1 0.000976
232 1 0.000827
237 1 0.000882
239 1 0.00089
246 1 0.00111
253 1 0.000838
259 1 0.000974
266 1 0.000999
276 1 0.00083
279 1 0.000947
283 1 0.00107
291 1 0.001
337 1 0.00116
449 1 0.00116
473 1 0.00121
528 1 0.00117
588 1 0.00118
867 1 0.0012
936 1 0.00119
1100 1 0.00119
1220 1 0.0012
1360 1 0.0012
1550 1 0.0012
1570 1 0.0012
2300 1 0.00121
2480 1 0.00121
2930 1 0.00121
2960 1 0.00121
3110 1 0.00121
3290 1 0.00121
4320 1 0.00121
4620 1 0.00121
4660 1 0.00121
4820 1 0.00121
6840 1 0.00121
7320 1 0.00121
7410 1 0.00122
7480 1 0.00121
7880 1 0.00121
12400 1 0.00121
13600 1 0.00122
15100 1 0.00122
15400 1 0.00121
16400 1 0.00122
16600 1 0.00122
17100 1 0.00122
18100 1 0.00122
21000 1 0.00122
24000 1 0.00122
25400 1 0.00122
25800 1 0.00122
26000 1 0.00122
27500 1 0.00122
27600 1 0.00122
27900 1 0.00122
29100 1 0.00122
30200 1 0.00122
30400 1 0.00122
31600 1 0.00122
33300 1 0.00122
35900 1 0.00122
37100 1 0.00122
37600 1 0.00122
38300 1 0.00122
39400 1 0.00122
41900 1 0.00122
42300 1 0.00122
43100 1 0.00122
43400 1 0.00122
48100 1 0.00122
48900 1 0.00122
53200 1 0.00122
55300 1 0.00122
57300 1 0.00122
59000 1 0.00122
60100 1 0.00122
61700 1 0.00122
62200 1 0.00122
66900 1 0.00122
67800 1 0.00122
68300 1 0.00122
69400 1 0.00122
71200 1 0.00122
72600 1 0.00122
77300 1 0.00122
102000 1 0.00122
111000 1 0.00122
127000 1 0.00122
162000 1 0.00122
168000 1 0.00122
178000 1 0.00122
179000 1 0.00122
185000 1 0.00122
190000 1 0.00122
207000 1 0.00122
207000 1 0.00122
218000 1 0.00122
244000 1 0.00122
249000 1 0.00122
251000 1 0.00122
258000 1 0.00122
280000 1 0.00122
282000 1 0.00122
288000 1 0.00122
296000 1 0.00122
299000 1 0.00122
301000 1 0.00122
304000 1 0.00122
311000 1 0.00122
337000 1 0.00122
345000 1 0.00122

CL156 ----> CL35

image

No. of shared pairs: :218

CL156 ----> CL106

image

No. of shared pairs: :141

CL156 ----> CL31

image

No. of shared pairs: :41

CL156 ----> CL43

image

No. of shared pairs: :24

CL156 ----> CL4

image

No. of shared pairs: :15

CL156 ----> CL838

image

No. of shared pairs: :13

CL156 ----> CL24

image

No. of shared pairs: :12

CL156 ----> CL47

image

No. of shared pairs: :11

CL156 ----> CL17

image

No. of shared pairs: :10