Cluster no. 157

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Cluster is part of supercluster: 74

Cluster characteristics:

size 9142
size_real 9142
ecount 78993
supercluster 74
annotations_summary 27.98% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-INT
17.30% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-aRH
2.75% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-RH
0.75% organelle/mitochondria
0.26% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-RT
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-INT
0.01% organelle/plastid
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RH
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-RH
pair_completeness 0.715840840840841
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.186720630059068
satellite_probability 7.06685200365323e-14
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 69 0.00755
plastid plastid 1 0.00011
TatIII Ty3-INT TatIII Ty3-INT 2558 0.27981
TatIV_Ogre Ty3-INT TatIV_Ogre Ty3-INT 2 0.00022
TatIII Ty3-RH TatIII Ty3-RH 251 0.02746
TatIV_Ogre Ty3-RH TatIV_Ogre Ty3-RH 1 0.00011
TatV Ty3-RH TatV Ty3-RH 1 0.00011
TatIII Ty3-RT TatIII Ty3-RT 24 0.00263
TatIII Ty3-aRH TatIII Ty3-aRH 1582 0.17305

clusters with similarity:

Cluster Number of similarity hits
27 136
69 105
73 99
108 12
43 7
42 3
117 3
221 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
69 109 0.0613
73 63 0.04
42 48 0.0192
117 48 0.0252
43 34 0.0104
838 20 0.0256
74 10 0.00462
1280 10 0.0129
156 9 0.00571
31 8 0.00141
504 8 0.0103
5180 6 0.00786
29 5 0.002
40 5 0.00118
85 5 0.00244
2280 5 0.00653
8740 5 0.00657
1 4 0.000957
17 4 0.000625
27 4 0.00197
14000 4 0.00527
40900 4 0.00527
3 3 0.000699
5 3 0.00132
6 3 0.000674
9 3 0.000905
16 3 0.000932
34 3 0.000983
41 3 0.000824
63 3 0.000818
67 3 0.00105
108 3 0.00195
110 3 0.00187
153 3 0.00148
973 3 0.00385
1870 3 0.00391
5160 3 0.00393
8210 3 0.00394
9520 3 0.00394
19000 3 0.00395
33900 3 0.00395
39300 3 0.00395
45800 3 0.00396
2 2 0.000322
4 2 0.000489
8 2 0.000871
14 2 0.000498
15 2 0.000655
22 2 0.000589
23 2 0.00066
28 2 0.000937
35 2 0.000513
38 2 0.00104
44 2 0.000544
84 2 0.000883
89 2 0.000983
92 2 0.00148
97 2 0.000878
102 2 0.000658
106 2 0.000943
145 2 0.000935
168 2 0.00106
177 2 0.00168
191 2 0.00119
2760 2 0.00261
12300 2 0.00263
14800 2 0.00263
20700 2 0.00264
20700 2 0.00264
30000 2 0.00264
39400 2 0.00264
46500 2 0.00264
47200 2 0.00264
47500 2 0.00264
59200 2 0.00264
91500 2 0.00264
104000 2 0.00264
116000 2 0.00264
162000 2 0.00264
172000 2 0.00264
172000 2 0.00264
172000 2 0.00264
178000 2 0.00264
181000 2 0.00264
186000 2 0.00264
209000 2 0.00264
212000 2 0.00264
221000 2 0.00264
224000 2 0.00264
226000 2 0.00264
227000 2 0.00264
228000 2 0.00264
252000 2 0.00264
262000 2 0.00264
266000 2 0.00264
296000 2 0.00264
302000 2 0.00264
313000 2 0.00264
334000 2 0.00264
7 1 0.000193
10 1 0.00048
12 1 0.000212
13 1 0.000461
18 1 0.000397
19 1 0.000388
21 1 0.000332
25 1 0.000396
30 1 0.000234
33 1 0.000494
37 1 0.000265
45 1 0.000299
46 1 0.00044
48 1 0.000256
49 1 0.000417
50 1 0.000428
53 1 0.000281
55 1 0.000227
56 1 0.00102
58 1 0.000641
59 1 0.000552
64 1 0.000621
66 1 0.000287
68 1 0.000463
75 1 0.000273
76 1 0.000485
77 1 0.000505
78 1 0.000313
81 1 0.00034
86 1 0.000317
87 1 0.000492
88 1 0.000332
100 1 0.000599
103 1 0.00037
104 1 0.00064
105 1 0.00046
113 1 0.000497
114 1 0.000728
115 1 0.000405
120 1 0.000496
123 1 0.000568
125 1 0.000672
127 1 0.00052
128 1 0.000692
129 1 0.000749
131 1 0.000986
132 1 0.000672
133 1 0.00029
135 1 0.000589
141 1 0.000507
142 1 0.00064
144 1 8e-04
151 1 0.000615
152 1 0.000406
154 1 0.000774
158 1 0.000591
159 1 0.000649
166 1 0.000704
169 1 0.000679
172 1 0.000526
173 1 0.000808
175 1 0.000752
178 1 0.000823
182 1 0.000655
183 1 0.00066
184 1 0.000865
186 1 0.000498
193 1 0.000832
195 1 0.000894
205 1 0.000725
211 1 0.000795
216 1 0.000975
221 1 0.00101
227 1 0.000947
229 1 0.000733
232 1 0.000873
235 1 0.000721
248 1 0.00104
250 1 0.0011
255 1 0.000838
256 1 0.00101
258 1 0.000783
282 1 0.0011
342 1 0.0012
367 1 0.00122
476 1 0.00123
567 1 0.00125
653 1 0.00127
2140 1 0.0013
2810 1 0.00131
3420 1 0.00131
3650 1 0.00131
4880 1 0.00131
5260 1 0.00131
6020 1 0.00131
6550 1 0.00131
6840 1 0.00131
6890 1 0.00131
7790 1 0.00131
8340 1 0.00132
8430 1 0.00132
9360 1 0.00132
11400 1 0.00132
11500 1 0.00131
16000 1 0.00132
16400 1 0.00132
17000 1 0.00132
17300 1 0.00132
18300 1 0.00132
18800 1 0.00132
19500 1 0.00132
19700 1 0.00132
20400 1 0.00132
20400 1 0.00132
21400 1 0.00132
21700 1 0.00132
21800 1 0.00132
22000 1 0.00132
22900 1 0.00132
23200 1 0.00132
23700 1 0.00132
23700 1 0.00132
26400 1 0.00132
26600 1 0.00132
28600 1 0.00132
29600 1 0.00132
30400 1 0.00132
31300 1 0.00132
35900 1 0.00132
40700 1 0.00132
43700 1 0.00132
43800 1 0.00132
44800 1 0.00132
45200 1 0.00132
45600 1 0.00132
51200 1 0.00132
54500 1 0.00132
55200 1 0.00132
55600 1 0.00132
62700 1 0.00132
63400 1 0.00132
64400 1 0.00132
67900 1 0.00132
74600 1 0.00132
75800 1 0.00132
75900 1 0.00132
78200 1 0.00132
80000 1 0.00132
80500 1 0.00132
80700 1 0.00132
83200 1 0.00132
97800 1 0.00132
1e+05 1 0.00132
102000 1 0.00132
108000 1 0.00132
113000 1 0.00132
121000 1 0.00132
140000 1 0.00132
141000 1 0.00132
141000 1 0.00132
142000 1 0.00132
144000 1 0.00132
149000 1 0.00132
155000 1 0.00132
162000 1 0.00132
175000 1 0.00132
178000 1 0.00132
187000 1 0.00132
190000 1 0.00132
194000 1 0.00132
203000 1 0.00132
206000 1 0.00132
208000 1 0.00132
215000 1 0.00132
226000 1 0.00132
234000 1 0.00132
236000 1 0.00132
267000 1 0.00132
290000 1 0.00132
307000 1 0.00132
310000 1 0.00132
312000 1 0.00132
315000 1 0.00132
316000 1 0.00132
319000 1 0.00132
322000 1 0.00132
341000 1 0.00132

CL157 ----> CL69

image

No. of shared pairs: :109

CL157 ----> CL73

image

No. of shared pairs: :63

CL157 ----> CL42

image

No. of shared pairs: :48

CL157 ----> CL117

image

No. of shared pairs: :48

CL157 ----> CL43

image

No. of shared pairs: :34

CL157 ----> CL838

image

No. of shared pairs: :20

CL157 ----> CL74

image

No. of shared pairs: :10

CL157 ----> CL1277

image

No. of shared pairs: :10