Cluster no. 159

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Cluster is part of supercluster: 76

Cluster characteristics:

size 9040
size_real 9040
ecount 129592
supercluster 76
annotations_summary 0.03% Class_I/LTR/Ty1_copia/Tork:Ty1-GAG
pair_completeness 0.704374057315234
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0560840707964602
satellite_probability 8.23266535769169e-19
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Tork Ty1-GAG Tork Ty1-GAG 3 0.00033

clusters with similarity:

Cluster Number of similarity hits
3 724
64 57
223 25
151 6
231 3
17 1
31 1
144 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
64 77 0.047
151 71 0.043
231 48 0.0496
3 23 0.00532
1910 11 0.0138
17 8 0.00124
30 8 0.00186
25 7 0.00274
51 7 0.00196
223 7 0.0063
11 6 0.00142
6780 6 0.00761
7350 6 0.00761
6 5 0.00112
24 5 0.00133
31 5 0.00088
66 5 0.00142
78 5 0.00155
102 5 0.00163
3300 5 0.0063
18300 5 0.00635
2 4 0.000641
4 4 0.000972
7 4 0.000769
15 4 0.0013
47 4 0.00125
81 4 0.00135
86 4 0.00126
122 4 0.00203
130 4 0.00144
219 4 0.0037
3790 4 0.00507
5800 4 0.00508
6420 4 0.00507
16400 4 0.00508
19400 4 0.00508
12 3 0.000633
19 3 0.00115
36 3 0.00132
44 3 0.000811
48 3 0.000763
72 3 0.00149
85 3 0.00145
90 3 0.000959
107 3 0.00204
145 3 0.00139
169 3 0.002
3140 3 0.00378
4780 3 0.0038
5300 3 0.0038
6040 3 0.0038
9120 3 0.00381
17600 3 0.00381
46000 3 0.00382
1 2 0.000475
9 2 0.000598
23 2 0.000655
26 2 0.000717
33 2 0.000974
40 2 0.000471
42 2 0.000791
49 2 0.000825
50 2 0.000846
63 2 0.000542
92 2 0.00145
99 2 0.00139
109 2 0.00137
110 2 0.00123
118 2 0.00128
119 2 0.00152
120 2 0.000978
121 2 0.00156
123 2 0.00112
129 2 0.00147
161 2 0.000966
162 2 0.00103
173 2 0.00158
204 2 0.00183
211 2 0.00156
353 2 0.00238
806 2 0.00248
2940 2 0.00253
4160 2 0.00254
7340 2 0.00254
10400 2 0.00254
11400 2 0.00254
12000 2 0.00254
13900 2 0.00254
13900 2 0.00254
15600 2 0.00254
18600 2 0.00254
19200 2 0.00254
24900 2 0.00254
26100 2 0.00255
32100 2 0.00254
33300 2 0.00254
36500 2 0.00255
40700 2 0.00255
41800 2 0.00254
43200 2 0.00255
45200 2 0.00254
64100 2 0.00255
69600 2 0.00255
77100 2 0.00255
77300 2 0.00255
85200 2 0.00255
99600 2 0.00255
190000 2 0.00255
2e+05 2 0.00255
201000 2 0.00255
203000 2 0.00255
206000 2 0.00255
232000 2 0.00255
249000 2 0.00255
289000 2 0.00255
289000 2 0.00255
293000 2 0.00255
319000 2 0.00255
321000 2 0.00255
340000 2 0.00255
346000 2 0.00255
347000 2 0.00255
5 1 0.000434
8 1 0.000431
10 1 0.000474
13 1 0.000455
14 1 0.000247
16 1 0.000308
20 1 0.000242
21 1 0.000329
22 1 0.000292
27 1 0.000486
28 1 0.000463
34 1 0.000325
35 1 0.000255
37 1 0.000263
38 1 0.000515
41 1 0.000273
43 1 0.000303
45 1 0.000297
52 1 0.00039
53 1 0.000279
54 1 0.000572
55 1 0.000226
57 1 0.000561
59 1 0.000544
62 1 0.000295
68 1 0.000457
69 1 0.000554
71 1 0.000336
73 1 0.000624
74 1 0.000456
75 1 0.000271
76 1 0.000479
89 1 0.000485
91 1 0.000696
93 1 0.000652
95 1 0.000585
96 1 0.000571
98 1 0.000608
100 1 0.000589
101 1 0.000442
106 1 0.000466
111 1 0.000305
112 1 0.000701
114 1 0.000714
115 1 0.000401
116 1 0.000358
124 1 0.000604
125 1 0.00066
126 1 0.000529
128 1 0.00068
132 1 0.00066
133 1 0.000287
134 1 0.000498
137 1 0.000588
138 1 0.000668
139 1 0.000538
140 1 0.000373
143 1 0.000513
148 1 0.000554
149 1 0.000692
153 1 0.000487
154 1 0.000758
156 1 0.000623
157 1 0.000649
163 1 0.00049
164 1 0.00101
165 1 0.000515
168 1 0.000523
174 1 0.000547
177 1 0.000823
179 1 0.000728
181 1 0.000659
189 1 0.000578
197 1 0.000595
199 1 0.000954
205 1 0.000711
206 1 0.000812
213 1 0.00054
217 1 0.000775
242 1 0.000805
250 1 0.00107
254 1 0.00109
256 1 0.00098
270 1 0.00121
281 1 0.00116
285 1 0.0011
291 1 0.00104
302 1 0.00112
324 1 0.00107
389 1 0.00117
515 1 0.00121
627 1 0.00122
660 1 0.00123
688 1 0.00122
692 1 0.00125
940 1 0.00125
1040 1 0.00125
1040 1 0.00124
1050 1 0.00126
1060 1 0.00124
1240 1 0.00125
1490 1 0.00125
1600 1 0.00126
1700 1 0.00126
1890 1 0.00127
2040 1 0.00126
2070 1 0.00126
2640 1 0.00127
2990 1 0.00126
4160 1 0.00127
4620 1 0.00127
4990 1 0.00127
5550 1 0.00127
6260 1 0.00127
6700 1 0.00127
6890 1 0.00127
7120 1 0.00127
7580 1 0.00127
7690 1 0.00127
8090 1 0.00127
8140 1 0.00127
8500 1 0.00127
9450 1 0.00127
9470 1 0.00127
9600 1 0.00127
10100 1 0.00127
10100 1 0.00127
10100 1 0.00127
10300 1 0.00127
11200 1 0.00127
11600 1 0.00127
12200 1 0.00127
14200 1 0.00127
14200 1 0.00127
14300 1 0.00127
14800 1 0.00127
14900 1 0.00127
15100 1 0.00127
15400 1 0.00127
16100 1 0.00127
16600 1 0.00127
17800 1 0.00127
18700 1 0.00127
20600 1 0.00127
22800 1 0.00127
23300 1 0.00127
23900 1 0.00127
24900 1 0.00127
25400 1 0.00127
25500 1 0.00127
26200 1 0.00127
26400 1 0.00127
27200 1 0.00127
27400 1 0.00127
28500 1 0.00127
30800 1 0.00127
30900 1 0.00127
31000 1 0.00127
31800 1 0.00127
37900 1 0.00127
38400 1 0.00127
38600 1 0.00127
38700 1 0.00127
39300 1 0.00127
40100 1 0.00127
40700 1 0.00127
43900 1 0.00127
44300 1 0.00127
45400 1 0.00127
48500 1 0.00127
49500 1 0.00127
50700 1 0.00127
52100 1 0.00127
53500 1 0.00127
54700 1 0.00127
55700 1 0.00127
56000 1 0.00127
56400 1 0.00127
56600 1 0.00127
58100 1 0.00127
58900 1 0.00127
60900 1 0.00127
62000 1 0.00127
62100 1 0.00127
62400 1 0.00127
62700 1 0.00127
64300 1 0.00127
73600 1 0.00127
76000 1 0.00127
76500 1 0.00127
77400 1 0.00127
82500 1 0.00127
86500 1 0.00127
93100 1 0.00127
101000 1 0.00127
110000 1 0.00127
112000 1 0.00127
115000 1 0.00127
117000 1 0.00127
117000 1 0.00127
128000 1 0.00127
133000 1 0.00127
135000 1 0.00127
147000 1 0.00127
148000 1 0.00127
152000 1 0.00127
156000 1 0.00127
159000 1 0.00127
178000 1 0.00127
178000 1 0.00127
178000 1 0.00127
179000 1 0.00127
185000 1 0.00127
194000 1 0.00127
198000 1 0.00127
210000 1 0.00127
210000 1 0.00127
212000 1 0.00127
212000 1 0.00127
227000 1 0.00127
232000 1 0.00127
239000 1 0.00127
245000 1 0.00127
247000 1 0.00127
250000 1 0.00127
252000 1 0.00127
252000 1 0.00127
256000 1 0.00127
257000 1 0.00127
259000 1 0.00127
261000 1 0.00127
263000 1 0.00127
285000 1 0.00127
289000 1 0.00127
290000 1 0.00127
291000 1 0.00127
293000 1 0.00127
303000 1 0.00127
307000 1 0.00127
310000 1 0.00127
314000 1 0.00127
319000 1 0.00127
321000 1 0.00127
323000 1 0.00127
336000 1 0.00127
343000 1 0.00127

CL159 ----> CL64

image

No. of shared pairs: :77

CL159 ----> CL151

image

No. of shared pairs: :71

CL159 ----> CL231

image

No. of shared pairs: :48

CL159 ----> CL3

image

No. of shared pairs: :23

CL159 ----> CL1913

image

No. of shared pairs: :11