Cluster no. 160

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Cluster is part of supercluster: 77

Cluster characteristics:

size 9018
size_real 9018
ecount 173201
supercluster 77
annotations_summary 0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.01% organelle/plastid
pair_completeness 0.689080352125866
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0655355954757152
satellite_probability 3.1107067036829e-18
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 1 0.00011
TatV Ty3-INT TatV Ty3-INT 1 0.00011

clusters with similarity:

Cluster Number of similarity hits
18 149
59 121
28 102
16 80
171 20
148 15
213 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
28 204 0.0924
59 176 0.0933
18 175 0.0675
171 80 0.0482
148 57 0.0308
16 40 0.0121
2610 10 0.0119
17 9 0.00139
520 8 0.00949
10600 7 0.0084
7620 6 0.00719
12900 6 0.00719
31 5 0.000873
9410 5 0.006
1 4 0.00094
3 4 0.000916
22 4 0.00115
54 4 0.00223
10300 4 0.00479
29600 4 0.00481
38300 4 0.00481
6 3 0.000663
7 3 0.000572
71 3 0.000993
88 3 0.000974
101 3 0.0013
102 3 0.000964
168 3 0.00153
213 3 0.00158
1000 3 0.00354
4420 3 0.00359
7240 3 0.00359
12700 3 0.0036
15200 3 0.0036
22800 3 0.0036
26700 3 0.0036
31600 3 0.00361
54900 3 0.00361
69500 3 0.00361
2 2 0.000318
5 2 0.000851
8 2 0.000845
9 2 0.00059
10 2 0.000927
14 2 0.000489
21 2 0.000649
24 2 0.000525
66 2 0.000561
67 2 0.000685
83 2 0.00101
87 2 0.000951
95 2 0.00114
97 2 0.000851
99 2 0.00134
119 2 0.00147
120 2 0.000957
121 2 0.0015
126 2 0.00103
130 2 0.000708
132 2 0.00128
151 2 0.00118
153 2 0.000952
155 2 0.00129
163 2 0.000959
173 2 0.00153
790 2 0.00235
2070 2 0.00238
2150 2 0.00238
3740 2 0.0024
8690 2 0.0024
9800 2 0.0024
12600 2 0.0024
20300 2 0.00241
23100 2 0.0024
28100 2 0.00241
28700 2 0.0024
30400 2 0.0024
33300 2 0.0024
35200 2 0.00241
41500 2 0.0024
56300 2 0.00241
74400 2 0.00241
84200 2 0.00241
96700 2 0.00241
98900 2 0.00241
102000 2 0.00241
130000 2 0.00241
183000 2 0.00241
187000 2 0.00241
206000 2 0.00241
230000 2 0.00241
289000 2 0.00241
308000 2 0.00241
316000 2 0.00241
321000 2 0.00241
322000 2 0.00241
342000 2 0.00241
348000 2 0.00241
4 1 0.00024
11 1 0.000234
13 1 0.000446
15 1 0.00032
19 1 0.000377
23 1 0.000322
26 1 0.000353
27 1 0.000475
32 1 0.000443
33 1 0.000477
34 1 0.00032
35 1 0.000252
36 1 0.00043
37 1 0.00026
38 1 0.000503
39 1 0.000449
41 1 0.000269
43 1 0.000299
44 1 0.000267
48 1 0.000251
56 1 0.000951
58 1 0.000612
62 1 0.000291
63 1 0.000267
65 1 0.000481
70 1 0.000602
72 1 0.000485
74 1 0.000447
76 1 0.000469
77 1 0.000487
80 1 0.000468
81 1 0.000332
82 1 0.000561
84 1 0.000428
89 1 0.000474
92 1 0.000702
93 1 0.000633
94 1 0.00089
96 1 0.000556
98 1 0.000591
100 1 0.000574
106 1 0.000456
107 1 0.000661
108 1 0.00062
111 1 0.000301
112 1 0.000679
114 1 0.000691
127 1 0.000501
129 1 0.00071
133 1 0.000284
135 1 0.000564
138 1 0.000648
141 1 0.000489
143 1 0.000502
145 1 0.000452
147 1 0.000294
152 1 0.000394
165 1 0.000503
174 1 0.000533
177 1 0.000793
182 1 0.000625
184 1 0.000813
186 1 0.000481
188 1 0.00107
191 1 0.000571
206 1 0.000782
207 1 0.000921
222 1 0.000838
223 1 0.000865
233 1 0.00102
245 1 0.000701
265 1 0.00105
419 1 0.00117
447 1 0.00118
809 1 0.0012
1010 1 0.00117
2420 1 0.0012
3080 1 0.00119
3330 1 0.0012
3440 1 0.0012
3450 1 0.0012
4190 1 0.0012
4510 1 0.0012
4780 1 0.0012
6800 1 0.0012
7120 1 0.0012
10300 1 0.0012
11000 1 0.0012
15500 1 0.0012
16500 1 0.0012
16700 1 0.0012
17700 1 0.0012
22800 1 0.0012
23200 1 0.0012
24200 1 0.0012
25500 1 0.0012
28200 1 0.0012
28300 1 0.0012
28700 1 0.0012
31100 1 0.0012
31300 1 0.0012
31900 1 0.0012
32200 1 0.0012
34700 1 0.0012
36600 1 0.0012
36800 1 0.0012
36900 1 0.0012
39700 1 0.0012
40100 1 0.0012
43900 1 0.0012
48100 1 0.0012
49500 1 0.0012
52000 1 0.0012
52800 1 0.0012
55700 1 0.0012
55800 1 0.0012
59700 1 0.0012
59900 1 0.0012
61100 1 0.0012
62400 1 0.0012
62600 1 0.0012
63200 1 0.0012
63600 1 0.0012
67900 1 0.0012
70400 1 0.0012
70700 1 0.0012
75400 1 0.0012
75500 1 0.0012
77400 1 0.0012
81300 1 0.0012
83500 1 0.0012
86500 1 0.0012
93100 1 0.0012
96900 1 0.0012
115000 1 0.0012
119000 1 0.0012
131000 1 0.0012
133000 1 0.0012
133000 1 0.0012
136000 1 0.0012
138000 1 0.0012
146000 1 0.0012
168000 1 0.0012
173000 1 0.0012
187000 1 0.0012
192000 1 0.0012
225000 1 0.0012
230000 1 0.0012
234000 1 0.0012
254000 1 0.0012
267000 1 0.0012
271000 1 0.0012
278000 1 0.0012
290000 1 0.0012
323000 1 0.0012
335000 1 0.0012
344000 1 0.0012

CL160 ----> CL28

image

No. of shared pairs: :204

CL160 ----> CL59

image

No. of shared pairs: :176

CL160 ----> CL18

image

No. of shared pairs: :175

CL160 ----> CL171

image

No. of shared pairs: :80

CL160 ----> CL148

image

No. of shared pairs: :57

CL160 ----> CL16

image

No. of shared pairs: :40

CL160 ----> CL2612

image

No. of shared pairs: :10