Cluster no. 161

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Cluster is part of supercluster: 78

Cluster characteristics:

size 8945
size_real 8945
ecount 50422
supercluster 78
annotations_summary 2.77% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-INT
0.77% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-PROT
0.75% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT
0.54% Class_I/LTR/Ty1_copia/Tork:Ty1-INT
0.38% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-GAG
0.18% Class_I/LTR/Ty1_copia/Angela:Ty1-INT
0.09% Class_I/LTR/Ty1_copia/Ikeros:Ty1-PROT
0.06% Class_I/LTR/Ty1_copia/Ale:Ty1-PROT
0.04% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.03% Class_I/LTR/Ty1_copia/SIRE:Ty1-INT
0.03% Class_I/LTR/Ty1_copia/Alesia:Ty1-INT
0.02% Class_I/LTR/Ty1_copia/Bryco:Ty1-PROT
0.02% Class_I/LTR/Ty1_copia/Ikeros:Ty1-INT
0.02% Class_I/LTR/Ty1_copia/Gymco-I:Ty1-INT
0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-GAG
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
0.01% Class_I/LTR/Ty1_copia/TAR:Ty1-INT
0.01% Class_I/LTR/Ty1_copia/Alesia:Ty1-PROT
0.01% Class_I/LTR/Ty1_copia/Tork:Ty1-PROT
0.01% Class_I/LTR/Ty1_copia/Ivana:Ty1-PROT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-aRH
pair_completeness 0.553490795415075
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00659586361095584
satellite_probability 5.53369227532392e-21
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Ale Ty1-GAG Ale Ty1-GAG 2 0.00022
Gymco-II Ty1-GAG Gymco-II Ty1-GAG 34 0.00380
Ale Ty1-INT Ale Ty1-INT 4 0.00045
Alesia Ty1-INT Alesia Ty1-INT 3 0.00034
Angela Ty1-INT Angela Ty1-INT 16 0.00179
Gymco-I Ty1-INT Gymco-I Ty1-INT 2 0.00022
Gymco-II Ty1-INT Gymco-II Ty1-INT 248 0.02772
Ikeros Ty1-INT Ikeros Ty1-INT 2 0.00022
Ivana Ty1-INT Ivana Ty1-INT 67 0.00749
SIRE Ty1-INT SIRE Ty1-INT 3 0.00034
TAR Ty1-INT TAR Ty1-INT 1 0.00011
Tork Ty1-INT Tork Ty1-INT 48 0.00537
Ale Ty1-PROT Ale Ty1-PROT 5 0.00056
Alesia Ty1-PROT Alesia Ty1-PROT 1 0.00011
Bryco Ty1-PROT Bryco Ty1-PROT 2 0.00022
Gymco-II Ty1-PROT Gymco-II Ty1-PROT 69 0.00771
Ikeros Ty1-PROT Ikeros Ty1-PROT 8 0.00089
Ivana Ty1-PROT Ivana Ty1-PROT 1 0.00011
Tork Ty1-PROT Tork Ty1-PROT 1 0.00011
Tekay Ty3-CHDII Tekay Ty3-CHDII 1 0.00011
TatIII Ty3-aRH TatIII Ty3-aRH 1 0.00011

clusters with similarity:

Cluster Number of similarity hits
30 12
25 6
68 2
81 2
155 2
2 1
4 1
7 1
78 1
86 1
122 1
255 1
271 1
335 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
30 43 0.00895
2 16 0.00237
17 13 0.00188
78 12 0.00322
51 9 0.00221
372 9 0.00647
25 8 0.00262
1060 8 0.00615
20 7 0.00151
81 7 0.00202
7 6 0.00105
189 6 0.00269
200 6 0.00284
1010 6 0.00459
1180 6 0.00462
4380 6 0.00465
6 5 0.001
119 5 0.00276
153 5 0.00196
196 5 0.00215
1920 5 0.00388
3240 5 0.00387
3290 5 0.00387
3 4 0.00083
22 4 0.00102
68 4 0.00149
86 4 0.00109
97 4 0.00143
122 4 0.00162
130 4 0.00122
245 4 0.00213
316 4 0.00294
9920 4 0.0031
14300 4 0.00311
9 3 0.00078
31 3 0.000485
34 3 0.000838
75 3 0.000716
85 3 0.00117
91 3 0.00155
103 3 0.000928
115 3 0.001
126 3 0.00125
134 3 0.0012
151 3 0.00139
163 3 0.00118
172 3 0.00124
1810 3 0.00231
4380 3 0.00232
4520 3 0.00232
10500 3 0.00233
18700 3 0.00233
43900 3 0.00233
60300 3 0.00233
81500 3 0.00233
4 2 0.000433
11 2 0.000422
12 2 0.000381
13 2 0.000741
14 2 0.00044
15 2 0.000558
16 2 0.000534
28 2 0.000751
32 2 0.000737
33 2 0.000783
35 2 0.000452
37 2 0.000464
39 2 0.000746
40 2 0.000421
41 2 0.00048
42 2 0.00066
48 2 0.000451
50 2 0.000698
55 2 0.000406
61 2 0.000698
89 2 0.00078
90 2 0.000551
140 2 0.000628
143 2 0.000816
159 2 0.000966
187 2 0.00105
191 2 0.000907
213 2 0.00085
217 2 0.00112
229 2 0.00106
247 2 0.00113
255 2 0.00116
260 2 0.00135
276 2 0.0012
294 2 0.00138
295 2 0.00138
307 2 0.00143
351 2 0.00142
2890 2 0.00155
4190 2 0.00155
5680 2 0.00155
5760 2 0.00155
6430 2 0.00155
7170 2 0.00155
7740 2 0.00155
9390 2 0.00155
9460 2 0.00155
13200 2 0.00155
14300 2 0.00155
14300 2 0.00155
15800 2 0.00155
19500 2 0.00155
22200 2 0.00155
23200 2 0.00155
24600 2 0.00155
28600 2 0.00155
28800 2 0.00155
30900 2 0.00155
35500 2 0.00155
46600 2 0.00155
55500 2 0.00155
59500 2 0.00155
62800 2 0.00155
73400 2 0.00155
74000 2 0.00155
77800 2 0.00155
85000 2 0.00155
89900 2 0.00155
96200 2 0.00155
98100 2 0.00155
142000 2 0.00155
159000 2 0.00155
162000 2 0.00155
190000 2 0.00155
196000 2 0.00155
2e+05 2 0.00155
208000 2 0.00155
208000 2 0.00155
209000 2 0.00155
225000 2 0.00155
228000 2 0.00155
231000 2 0.00155
232000 2 0.00155
245000 2 0.00155
253000 2 0.00155
256000 2 0.00155
259000 2 0.00155
281000 2 0.00155
281000 2 0.00155
284000 2 0.00155
287000 2 0.00155
3e+05 2 0.00155
315000 2 0.00155
316000 2 0.00155
334000 2 0.00155
340000 2 0.00155
344000 2 0.00155
1 1 0.000212
5 1 0.000356
10 1 0.000383
18 1 0.000328
21 1 0.000283
24 1 0.000235
29 1 0.00033
36 1 0.00036
45 1 0.000258
46 1 0.000357
47 1 0.00027
49 1 0.000342
53 1 0.000245
63 1 0.000238
65 1 0.000395
69 1 0.000434
70 1 0.000472
71 1 0.000288
79 1 0.000276
80 1 0.000386
95 1 0.000452
96 1 0.000444
99 1 0.000515
102 1 0.00028
110 1 0.000469
114 1 0.000525
116 1 0.000304
124 1 0.000464
128 1 0.000507
131 1 0.000648
132 1 0.000496
133 1 0.000251
135 1 0.000449
136 1 0.000538
139 1 0.000424
149 1 0.000513
150 1 0.000446
152 1 0.000334
166 1 0.000513
167 1 0.000385
169 1 5e-04
171 1 0.000473
177 1 0.000582
181 1 0.000495
186 1 0.000394
205 1 0.000524
206 1 0.000577
211 1 0.00056
212 1 0.00062
214 1 0.000627
216 1 0.000644
226 1 0.000671
232 1 0.000597
235 1 0.000522
238 1 0.000638
258 1 0.000554
266 1 0.000682
268 1 0.000651
271 1 0.000722
282 1 0.000695
285 1 0.000707
302 1 0.000719
313 1 0.00071
335 1 0.000743
339 1 0.000732
369 1 0.000753
391 1 0.000742
408 1 0.000728
514 1 0.000749
554 1 0.000758
620 1 0.000768
1050 1 0.000767
1090 1 0.000771
1270 1 0.000766
1560 1 0.000773
1780 1 0.000768
2110 1 0.000773
2450 1 0.000774
3280 1 0.000775
3780 1 0.000773
3830 1 0.000775
4350 1 0.000773
5630 1 0.000774
5750 1 0.000775
5890 1 0.000775
6020 1 0.000776
6960 1 0.000775
7200 1 0.000775
7350 1 0.000775
7430 1 0.000776
8660 1 0.000776
8790 1 0.000776
10200 1 0.000775
10500 1 0.000776
11400 1 0.000777
11900 1 0.000776
15700 1 0.000776
16700 1 0.000777
17100 1 0.000776
17900 1 0.000777
18000 1 0.000777
18800 1 0.000776
19900 1 0.000777
20200 1 0.000777
20700 1 0.000777
21100 1 0.000777
21400 1 0.000777
23900 1 0.000776
24100 1 0.000777
24600 1 0.000776
25800 1 0.000776
26400 1 0.000777
26600 1 0.000778
26800 1 0.000776
27000 1 0.000777
27500 1 0.000777
28000 1 0.000777
28800 1 0.000777
28900 1 0.000776
29200 1 0.000777
29400 1 0.000777
30000 1 0.000777
31600 1 0.000777
33400 1 0.000777
34100 1 0.000777
34200 1 0.000777
34600 1 0.000777
36000 1 0.000777
36600 1 0.000777
38200 1 0.000777
38300 1 0.000777
38300 1 0.000777
40500 1 0.000777
41000 1 0.000777
41400 1 0.000777
41600 1 0.000777
42500 1 0.000777
44500 1 0.000777
44900 1 0.000777
45300 1 0.000777
46200 1 0.000777
46600 1 0.000777
47700 1 0.000778
49700 1 0.000777
50500 1 0.000778
50900 1 0.000778
51200 1 0.000778
52100 1 0.000778
52300 1 0.000778
55000 1 0.000778
55800 1 0.000777
55800 1 0.000778
56200 1 0.000778
57400 1 0.000778
57800 1 0.000778
58300 1 0.000777
62600 1 0.000777
63600 1 0.000777
65000 1 0.000777
65100 1 0.000777
66500 1 0.000777
67800 1 0.000777
68700 1 0.000777
71600 1 0.000778
71700 1 0.000777
72800 1 0.000777
73200 1 0.000778
73400 1 0.000777
74600 1 0.000777
74700 1 0.000777
75100 1 0.000777
75900 1 0.000777
77600 1 0.000777
78300 1 0.000778
79000 1 0.000778
79500 1 0.000778
80500 1 0.000777
80500 1 0.000777
80700 1 0.000777
81600 1 0.000778
83600 1 0.000778
84100 1 0.000778
86100 1 0.000777
89100 1 0.000777
89900 1 0.000777
90400 1 0.000777
97000 1 0.000777
97500 1 0.000777
99100 1 0.000777
99300 1 0.000777
105000 1 0.000777
108000 1 0.000777
108000 1 0.000777
113000 1 0.000777
113000 1 0.000777
117000 1 0.000777
124000 1 0.000777
126000 1 0.000777
126000 1 0.000777
126000 1 0.000777
131000 1 0.000777
132000 1 0.000777
132000 1 0.000777
137000 1 0.000777
138000 1 0.000777
139000 1 0.000777
144000 1 0.000777
144000 1 0.000777
146000 1 0.000777
147000 1 0.000777
148000 1 0.000777
149000 1 0.000777
150000 1 0.000777
154000 1 0.000777
155000 1 0.000777
157000 1 0.000777
162000 1 0.000777
163000 1 0.000777
166000 1 0.000777
167000 1 0.000777
173000 1 0.000777
176000 1 0.000777
178000 1 0.000777
183000 1 0.000777
183000 1 0.000777
187000 1 0.000777
189000 1 0.000777
189000 1 0.000777
192000 1 0.000777
197000 1 0.000777
2e+05 1 0.000777
2e+05 1 0.000777
201000 1 0.000777
208000 1 0.000777
220000 1 0.000777
223000 1 0.000777
223000 1 0.000777
225000 1 0.000777
229000 1 0.000777
229000 1 0.000777
234000 1 0.000777
236000 1 0.000777
240000 1 0.000777
241000 1 0.000777
242000 1 0.000777
243000 1 0.000777
251000 1 0.000777
255000 1 0.000777
255000 1 0.000777
258000 1 0.000777
264000 1 0.000777
266000 1 0.000777
267000 1 0.000777
277000 1 0.000777
278000 1 0.000777
286000 1 0.000777
287000 1 0.000777
287000 1 0.000777
306000 1 0.000777
306000 1 0.000777
309000 1 0.000777
314000 1 0.000777
317000 1 0.000777
319000 1 0.000777
324000 1 0.000777
325000 1 0.000777
330000 1 0.000777
330000 1 0.000777
330000 1 0.000777
346000 1 0.000777
346000 1 0.000777

CL161 ----> CL30

image

No. of shared pairs: :43

CL161 ----> CL2

image

No. of shared pairs: :16

CL161 ----> CL17

image

No. of shared pairs: :13

CL161 ----> CL78

image

No. of shared pairs: :12