Cluster no. 162

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Cluster is part of supercluster: 79

Cluster characteristics:

size 8850
size_real 8850
ecount 157237
supercluster 79
annotations_summary 0.01% Class_II/Subclass_2/Helitron:Helitron-HEL2
0.01% organelle/plastid
pair_completeness 0.587443946188341
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.204057135998079
satellite_probability 8.14946436163977e-13
consensus None
TAREAN_annotation Other
orientation_score 0.992898185024169

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 1 0.00011
Helitron Helitron-HEL2 Helitron Helitron-HEL2 1 0.00011

clusters with similarity:

Cluster Number of similarity hits
98 55
291 6
120 4
126 3
311 3
17 1
170 1
196 1
215 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
98 42 0.0209
291 25 0.0188
483 22 0.0185
170 21 0.00954
17 14 0.00206
120 14 0.00581
196 14 0.00641
30 8 0.00171
5580 8 0.00692
1440 6 0.00519
3410 6 0.00519
13300 6 0.0052
3 5 0.00107
9 5 0.00135
24 5 0.00121
31 5 0.000827
85 5 0.00205
187 5 0.00283
396 5 0.00425
4230 5 0.00432
2 4 0.000606
48 4 0.000931
89 4 0.00165
118 4 0.00207
123 4 0.00186
126 4 0.00177
139 4 0.0018
166 4 0.00221
189 4 0.00191
213 4 0.0018
276 4 0.00261
3120 4 0.00346
5370 4 0.00346
7120 4 0.00347
4 3 0.00067
13 3 0.00117
14 3 0.00068
20 3 0.000668
44 3 0.000738
49 3 0.00108
51 3 0.000762
66 3 0.000773
78 3 0.000835
86 3 0.000846
97 3 0.00112
121 3 0.00182
130 3 0.000954
186 3 0.00125
198 3 0.00193
215 3 0.00195
242 3 0.00187
456 3 0.00254
1060 3 0.00256
2200 3 0.00259
2460 3 0.00259
2690 3 0.0026
3320 3 0.0026
6200 3 0.0026
6860 3 0.0026
18700 3 0.0026
54600 3 0.00261
80300 3 0.00261
1 2 0.000437
6 2 0.000413
7 2 0.000359
8 2 0.000744
15 2 0.00058
19 2 0.000673
22 2 0.000528
23 2 0.000585
26 2 0.000634
27 2 0.000825
28 2 0.000791
52 2 0.000683
62 2 0.000533
74 2 0.000782
94 2 0.00139
102 2 0.000583
109 2 0.0011
128 2 0.00109
134 2 0.000842
159 2 0.00103
178 2 0.00124
181 2 0.00106
191 2 0.000966
221 2 0.00144
232 2 0.0013
238 2 0.0014
243 2 0.00115
245 2 0.00115
563 2 0.00169
4880 2 0.00174
5320 2 0.00173
6380 2 0.00173
7460 2 0.00173
9270 2 0.00173
11300 2 0.00173
13300 2 0.00174
16400 2 0.00174
22800 2 0.00174
41100 2 0.00174
42000 2 0.00174
85600 2 0.00174
89300 2 0.00174
104000 2 0.00174
135000 2 0.00174
157000 2 0.00174
182000 2 0.00174
199000 2 0.00174
208000 2 0.00174
224000 2 0.00174
227000 2 0.00174
232000 2 0.00174
233000 2 0.00174
233000 2 0.00174
272000 2 0.00174
303000 2 0.00174
321000 2 0.00174
331000 2 0.00174
335000 2 0.00174
341000 2 0.00174
346000 2 0.00174
10 1 0.000404
11 1 0.000217
21 1 0.000294
29 1 0.000345
33 1 0.000413
34 1 0.00029
36 1 0.000378
38 1 0.000433
39 1 0.000393
41 1 0.000248
55 1 0.000209
59 1 0.000453
60 1 0.000458
61 1 0.000366
63 1 0.000246
64 1 0.000499
67 1 0.000309
71 1 0.000299
73 1 0.000508
79 1 0.000286
80 1 0.000407
83 1 0.000434
84 1 0.000376
87 1 0.000413
90 1 0.000286
91 1 0.000555
95 1 0.000482
96 1 0.000472
104 1 0.000512
105 1 0.00039
110 1 5e-04
112 1 0.000558
119 1 0.000596
122 1 0.000428
125 1 0.000532
135 1 0.000478
136 1 0.000581
137 1 0.000484
138 1 0.000536
142 1 0.000512
144 1 0.000609
145 1 0.000395
147 1 0.000269
149 1 0.000552
153 1 0.000413
158 1 0.00048
164 1 0.000735
165 1 0.000433
173 1 0.000613
176 1 0.000614
177 1 0.000632
180 1 0.000645
193 1 0.000627
195 1 0.000661
202 1 0.000686
203 1 0.000591
205 1 0.000564
211 1 0.000606
212 1 0.000677
217 1 0.000604
219 1 0.000691
229 1 0.000569
237 1 0.000683
239 1 0.000688
241 1 7e-04
247 1 0.00061
250 1 0.000767
255 1 0.00063
271 1 8e-04
273 1 0.000634
277 1 0.000781
286 1 0.000662
292 1 0.000716
314 1 0.000781
325 1 0.000832
408 1 0.000808
494 1 0.000832
525 1 0.000844
777 1 0.000852
837 1 0.000862
1120 1 0.000859
1170 1 0.000858
1230 1 0.000859
1820 1 0.000864
1850 1 0.000862
2510 1 0.000863
2540 1 0.000864
3510 1 0.000864
4060 1 0.000865
4570 1 0.000865
5330 1 0.000865
5680 1 0.000867
6990 1 0.000867
7530 1 0.000867
8730 1 0.000868
10000 1 0.000866
10300 1 0.000867
11800 1 0.000867
11800 1 0.000867
12000 1 0.000867
12200 1 0.000867
12700 1 0.000867
12700 1 0.000868
16300 1 0.000868
16400 1 0.000869
19400 1 0.000869
21900 1 0.000868
21900 1 0.000868
23300 1 0.000868
24700 1 0.000868
25800 1 0.000868
26100 1 0.000868
26300 1 0.000868
30200 1 0.000868
31400 1 0.000868
32400 1 0.000868
34700 1 0.000868
40600 1 0.000869
43400 1 0.000869
46300 1 0.000868
46900 1 0.000869
50400 1 0.000868
50400 1 0.000869
51600 1 0.000869
52200 1 0.000869
53900 1 0.000869
57800 1 0.000869
58000 1 0.000869
58100 1 0.000868
59000 1 0.000869
59100 1 0.000868
59300 1 0.000868
63100 1 0.000869
63200 1 0.000869
64900 1 0.000869
67800 1 0.000869
68600 1 0.000869
68800 1 0.000869
68800 1 0.000868
70600 1 0.000868
71700 1 0.000869
72200 1 0.000868
73100 1 0.000869
73100 1 0.000869
73500 1 0.000869
76100 1 0.000869
76400 1 0.000868
76600 1 0.000869
77300 1 0.000868
78000 1 0.000868
79900 1 0.000868
80500 1 0.000868
81400 1 0.000869
83100 1 0.000869
84500 1 0.000868
85400 1 0.000869
90200 1 0.000869
96900 1 0.000869
102000 1 0.000869
103000 1 0.000869
108000 1 0.000869
117000 1 0.000869
117000 1 0.000869
118000 1 0.000869
119000 1 0.000869
121000 1 0.000869
122000 1 0.000869
122000 1 0.000869
123000 1 0.000869
132000 1 0.000869
144000 1 0.000869
146000 1 0.000869
146000 1 0.000869
148000 1 0.000869
148000 1 0.000869
150000 1 0.000869
167000 1 0.000869
168000 1 0.000869
173000 1 0.000869
180000 1 0.000869
185000 1 0.000869
197000 1 0.000869
204000 1 0.000869
209000 1 0.000869
210000 1 0.000869
210000 1 0.000869
213000 1 0.000869
215000 1 0.000869
224000 1 0.000869
224000 1 0.000869
230000 1 0.000869
231000 1 0.000869
232000 1 0.000869
234000 1 0.000869
241000 1 0.000869
245000 1 0.000869
247000 1 0.000869
256000 1 0.000869
260000 1 0.000869
273000 1 0.000869
278000 1 0.000869
280000 1 0.000869
282000 1 0.000869
283000 1 0.000869
287000 1 0.000869
290000 1 0.000869
295000 1 0.000869
3e+05 1 0.000869
303000 1 0.000869
307000 1 0.000869
310000 1 0.000869
312000 1 0.000869
318000 1 0.000869
319000 1 0.000869
319000 1 0.000869
326000 1 0.000869
341000 1 0.000869

CL162 ----> CL98

image

No. of shared pairs: :42

CL162 ----> CL291

image

No. of shared pairs: :25

CL162 ----> CL483

image

No. of shared pairs: :22

CL162 ----> CL170

image

No. of shared pairs: :21

CL162 ----> CL17

image

No. of shared pairs: :14

CL162 ----> CL120

image

No. of shared pairs: :14

CL162 ----> CL196

image

No. of shared pairs: :14