Cluster no. 164

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Cluster is part of supercluster: 28

Cluster characteristics:

size 8445
size_real 8445
ecount 11935892
supercluster 28
annotations_summary 0.41% Class_I/LTR/Ty1_copia/SIRE:Ty1-INT
0.01% 45S_rDNA/5.8S_rDNA
pair_completeness 0.90503045341755
pbs_score 0.0
TR_score 0.44830125009586624
TR_monomer_length 27.0
loop_index 0.992532890837976
satellite_probability 0.944116825991768
consensus 
CCATGCGGCGCCCAAAATTTGGGGTTT

  

  

    TAREAN_annotation
    Putative satellite (high confidence)
  

  

    orientation_score
    0.99999941408184
  

 


 
 protein domains:



protein domains:


  





 
 Reads annotation summary










	

	 
	
 
		   
		cl_string  
		domain  
		Freq  
		proportion 
	
 

 
5.8S_rDNA 

5.8S_rDNA



 1

0.00012


 

 
SIRE Ty1-INT

SIRE

Ty1-INT

35

0.00414


 
	


 

 


 
 clusters with similarity:



  

    
      



 

    Cluster
    Number of similarity hits
  

      

   		
 

 

   
     

       



  

    217
    196
  

  

    244
    184
  

  

    194
    4
  

       

     

  		
 




 
 clusters connected through mates:



  

    
      




 

    Cluster
    Number of shared
 read pairs		
    k
  

      

   		
 

 

   
     

       




  

    244
    46
    0.145
  

  

    217
    38
    0.053
  

  

    194
    16
    0.0413
  

  

    2
    6
    0.00106
  

  

    1
    5
    0.00138
  

  

    3
    4
    0.00107
  

  

    74
    4
    0.00247
  

  

    8
    3
    0.00172
  

  

    10
    3
    0.00195
  

  

    12
    3
    0.00072
  

  

    39
    3
    0.00187
  

  

    42
    3
    0.00154
  

  

    47
    3
    0.00114
  

  

    71
    3
    0.00125
  

  

    80
    3
    0.00197
  

  

    140
    3
    0.00142
  

  

    233
    3
    0.00824
  

  

    7
    2
    0.000432
  

  

    15
    2
    0.000798
  

  

    17
    2
    0.000342
  

  

    18
    2
    0.00101
  

  

    21
    2
    0.000812
  

  

    24
    2
    0.000628
  

  

    26
    2
    0.000903
  

  

    27
    2
    0.00135
  

  

    29
    2
    0.00102
  

  

    30
    2
    0.000536
  

  

    31
    2
    0.000391
  

  

    33
    2
    0.00135
  

  

    34
    2
    0.000798
  

  

    38
    2
    0.00146
  

  

    46
    2
    0.00116
  

  

    51
    2
    0.000667
  

  

    53
    2
    0.000665
  

  

    57
    2
    0.00166
  

  

    61
    2
    0.00112
  

  

    62
    2
    0.00071
  

  

    64
    2
    0.00188
  

  

    65
    2
    0.00137
  

  

    66
    2
    0.000679
  

  

    67
    2
    0.00087
  

  

    86
    2
    0.000768
  

  

    88
    2
    0.000813
  

  

    102
    2
    0.000802
  

  

    117
    2
    0.00148
  

  

    163
    2
    0.00136
  

  

    171
    2
    0.00192
  

  

    183
    2
    0.00207
  

  

    184
    2
    0.00328
  

  

    210
    2
    0.00556
  

  

    17000
    2
    0.00937
  

  

    4
    1
    0.000282
  

  

    5
    1
    0.000578
  

  

    6
    1
    0.000256
  

  

    14
    1
    0.000288
  

  

    16
    1
    0.000374
  

  

    20
    1
    0.000281
  

  

    25
    1
    0.000505
  

  

    28
    1
    0.00063
  

  

    32
    1
    0.000611
  

  

    35
    1
    0.000299
  

  

    36
    1
    0.000586
  

  

    41
    1
    0.000323
  

  

    43
    1
    0.000366
  

  

    44
    1
    0.00032
  

  

    48
    1
    0.000298
  

  

    49
    1
    0.000541
  

  

    52
    1
    0.000503
  

  

    55
    1
    0.00026
  

  

    58
    1
    0.000986
  

  

    59
    1
    0.00079
  

  

    63
    1
    0.000321
  

  

    68
    1
    0.00062
  

  

    72
    1
    0.000694
  

  

    73
    1
    0.000973
  

  

    76
    1
    0.00066
  

  

    78
    1
    0.000377
  

  

    81
    1
    0.000418
  

  

    82
    1
    0.000859
  

  

    85
    1
    0.000667
  

  

    87
    1
    0.000674
  

  

    91
    1
    0.00116
  

  

    96
    1
    0.000848
  

  

    98
    1
    0.000933
  

  

    100
    1
    0.00089
  

  

    109
    1
    0.00113
  

  

    110
    1
    0.000944
  

  

    113
    1
    0.000683
  

  

    114
    1
    0.00121
  

  

    121
    1
    0.00141
  

  

    125
    1
    0.00106
  

  

    126
    1
    0.000759
  

  

    128
    1
    0.00111
  

  

    137
    1
    0.000886
  

  

    139
    1
    0.000779
  

  

    141
    1
    0.000701
  

  

    146
    1
    0.00108
  

  

    147
    1
    0.000359
  

  

    148
    1
    0.000812
  

  

    149
    1
    0.00115
  

  

    151
    1
    0.000927
  

  

    155
    1
    0.00108
  

  

    159
    1
    0.00101
  

  

    162
    1
    0.000735
  

  

    168
    1
    0.000747
  

  

    169
    1
    0.00108
  

  

    175
    1
    0.00128
  

  

    191
    1
    0.000884
  

  

    192
    1
    0.00312
  

  

    196
    1
    0.000803
  

  

    199
    1
    0.00211
  

  

    204
    1
    0.00193
  

  

    211
    1
    0.0014
  

  

    215
    1
    0.00167
  

  

    237
    1
    0.00191
  

  

    238
    1
    0.00203
  

  

    255
    1
    0.00154
  

  

    257
    1
    0.003
  

  

    259
    1
    0.0024
  

  

    273
    1
    0.00156
  

  

    277
    1
    0.00294
  

  

    304
    1
    0.00399
  

  

    418
    1
    0.00371
  

  

    452
    1
    0.00407
  

  

    529
    1
    0.00392
  

  

    574
    1
    0.00449
  

  

    949
    1
    0.00442
  

  

    986
    1
    0.00469
  

  

    1060
    1
    0.0043
  

  

    1580
    1
    0.00444
  

  

    1810
    1
    0.00459
  

  

    2730
    1
    0.00464
  

  

    3940
    1
    0.00471
  

  

    7880
    1
    0.00463
  

  

    8590
    1
    0.00466
  

  

    12200
    1
    0.00471
  

  

    12200
    1
    0.00471
  

  

    13400
    1
    0.00472
  

  

    15900
    1
    0.00472
  

  

    19000
    1
    0.00471
  

  

    28000
    1
    0.00472
  

  

    43800
    1
    0.00473
  

  

    45200
    1
    0.00473
  

  

    46800
    1
    0.00472
  

  

    52200
    1
    0.00474
  

  

    58800
    1
    0.00472
  

  

    65100
    1
    0.00474
  

  

    74700
    1
    0.00472
  

  

    77500
    1
    0.00472
  

  

    78600
    1
    0.00472
  

  

    83500
    1
    0.00472
  

  

    149000
    1
    0.00473
  

  

    154000
    1
    0.00473
  

  

    169000
    1
    0.00473
  

  

    181000
    1
    0.00473
  

  

    267000
    1
    0.00473
  

  

    271000
    1
    0.00473
  

       

     

  		
 





  
CL164 ----> CL244

       image
     
 No. of shared pairs: :46





  
CL164 ----> CL217

       image
     
 No. of shared pairs: :38





  
CL164 ----> CL194

       image
     
 No. of shared pairs: :16