Cluster no. 165

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Cluster is part of supercluster: 80

Cluster characteristics:

size 8311
size_real 8311
ecount 55466
supercluster 80
annotations_summary 6.04% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-GAG
0.67% Class_I/LTR/Ty1_copia/Tork:Ty1-GAG
0.24% Class_I/LTR/Ty1_copia/Ale:Ty1-GAG
0.14% Class_I/LTR/Ty1_copia/Ivana:Ty1-GAG
0.04% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-PROT
0.01% Class_I/LTR/Ty1_copia/Gymco-I:Ty1-GAG
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/chromo-unclass:Ty3-INT
pair_completeness 0.563981934512608
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0170857899169775
satellite_probability 7.64480299365326e-20
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Ale Ty1-GAG Ale Ty1-GAG 20 0.00241
Gymco-I Ty1-GAG Gymco-I Ty1-GAG 1 0.00012
Gymco-II Ty1-GAG Gymco-II Ty1-GAG 502 0.06040
Ivana Ty1-GAG Ivana Ty1-GAG 12 0.00144
Tork Ty1-GAG Tork Ty1-GAG 56 0.00674
Gymco-II Ty1-PROT Gymco-II Ty1-PROT 3 0.00036
chromo-unclass Ty3-INT chromo-unclass Ty3-INT 1 0.00012

clusters with similarity:

Cluster Number of similarity hits
11 286
51 18
97 14
78 11
250 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
11 390 0.0846
51 285 0.0722
78 57 0.0158
352 33 0.0251
869 13 0.011
7 12 0.00215
30 11 0.00235
86 10 0.00281
85 8 0.00327
122 7 0.00299
2210 7 0.00599
4590 7 0.00601
2 6 0.000908
17 6 0.000882
68 6 0.00234
3890 6 0.00516
6940 6 0.00516
16 5 0.00138
1950 5 0.00428
12 4 0.000782
15 4 0.00116
23 4 0.00117
36 4 0.00151
49 4 0.00143
134 4 0.00168
143 4 0.00172
5560 4 0.00344
6 3 0.000618
9 3 0.000807
14 3 0.000679
42 3 0.00103
91 3 0.00166
96 3 0.00141
151 3 0.00148
163 3 0.00124
212 3 0.00202
1790 3 0.00257
2230 3 0.00257
5140 3 0.00258
20800 3 0.00258
35800 3 0.00259
59400 3 0.00259
3 2 0.000426
4 2 0.000446
8 2 0.000742
13 2 0.000778
18 2 0.000685
19 2 0.000671
21 2 0.000586
22 2 0.000527
26 2 0.000633
31 2 0.00033
33 2 0.000824
34 2 0.000579
60 2 0.000912
63 2 0.000492
75 2 0.000492
92 2 0.00114
94 2 0.00138
97 2 0.000747
119 2 0.00119
121 2 0.00121
130 2 0.000634
133 2 0.000519
153 2 0.000823
173 2 0.00122
186 2 0.000831
250 2 0.00152
7560 2 0.00172
12400 2 0.00172
17600 2 0.00172
42500 2 0.00172
46900 2 0.00172
64600 2 0.00172
75800 2 0.00172
99700 2 0.00172
105000 2 0.00172
115000 2 0.00172
135000 2 0.00172
148000 2 0.00172
158000 2 0.00172
174000 2 0.00172
211000 2 0.00172
212000 2 0.00172
214000 2 0.00172
218000 2 0.00172
227000 2 0.00172
228000 2 0.00172
239000 2 0.00172
264000 2 0.00172
310000 2 0.00172
324000 2 0.00172
344000 2 0.00172
1 1 0.000218
5 1 0.000373
10 1 0.000402
20 1 0.000222
24 1 0.000242
25 1 0.000341
28 1 0.000394
32 1 0.000387
37 1 0.000239
38 1 0.000432
41 1 0.000247
44 1 0.000245
45 1 0.000267
46 1 0.000374
48 1 0.000232
54 1 0.000471
56 1 0.000725
59 1 0.000452
61 1 0.000365
65 1 0.000415
70 1 0.000503
74 1 0.000389
77 1 0.00042
79 1 0.000286
80 1 0.000405
81 1 0.000299
82 1 0.000473
83 1 0.000433
87 1 0.000411
88 1 0.000293
89 1 0.00041
93 1 0.000524
102 1 0.000291
103 1 0.000322
104 1 0.000509
106 1 0.000396
107 1 0.000543
111 1 0.000274
113 1 0.000414
114 1 0.000563
117 1 0.000434
120 1 0.000413
123 1 0.000463
124 1 0.000493
125 1 0.000529
140 1 0.000327
144 1 0.000606
148 1 0.000459
150 1 0.000473
152 1 0.000349
158 1 0.000478
159 1 0.000515
160 1 0.000503
162 1 0.000433
169 1 0.000534
170 1 0.000452
174 1 0.000454
178 1 0.000618
181 1 0.000529
189 1 0.000475
203 1 0.000588
204 1 0.000682
207 1 0.000707
211 1 0.000602
214 1 0.000681
216 1 0.000701
223 1 0.000673
226 1 0.000733
245 1 0.00057
246 1 0.000807
254 1 0.000773
260 1 0.000739
261 1 0.000828
278 1 0.000775
282 1 0.000762
288 1 0.000713
291 1 0.000748
298 1 0.00082
318 1 0.000745
325 1 0.000826
329 1 0.00084
335 1 0.000821
351 1 0.000779
356 1 0.000799
368 1 0.000825
384 1 0.000844
385 1 0.000854
422 1 0.000839
427 1 0.000837
450 1 0.000822
461 1 0.000823
556 1 0.000843
660 1 0.000842
1020 1 0.00085
1090 1 0.000854
3200 1 0.000858
4980 1 0.00086
5200 1 0.000861
5600 1 0.000859
5630 1 0.000859
6640 1 0.000861
6940 1 0.00086
9140 1 0.00086
12800 1 0.000861
13100 1 0.000861
15500 1 0.000861
18500 1 0.000862
19000 1 0.000862
20000 1 0.000861
21300 1 0.000862
21600 1 0.000862
21700 1 0.000861
22700 1 0.000862
23700 1 0.000862
24200 1 0.000861
24200 1 0.000861
24500 1 0.000861
24500 1 0.000862
27200 1 0.000861
31400 1 0.000862
34800 1 0.000862
36100 1 0.000862
37300 1 0.000862
37700 1 0.000862
39900 1 0.000862
40600 1 0.000862
43500 1 0.000862
45500 1 0.000862
46200 1 0.000863
49600 1 0.000863
51500 1 0.000863
52100 1 0.000862
52400 1 0.000862
53900 1 0.000862
54700 1 0.000862
55400 1 0.000863
56500 1 0.000862
57400 1 0.000862
58400 1 0.000863
61400 1 0.000863
61500 1 0.000862
67400 1 0.000863
68600 1 0.000862
68800 1 0.000862
70300 1 0.000862
71200 1 0.000862
71900 1 0.000862
73300 1 0.000863
75200 1 0.000863
79500 1 0.000862
83000 1 0.000863
94000 1 0.000862
94300 1 0.000862
103000 1 0.000862
123000 1 0.000862
164000 1 0.000862
178000 1 0.000862
179000 1 0.000862
191000 1 0.000862
191000 1 0.000862
192000 1 0.000862
193000 1 0.000862
195000 1 0.000862
201000 1 0.000862
204000 1 0.000862
212000 1 0.000862
216000 1 0.000862
217000 1 0.000862
225000 1 0.000862
226000 1 0.000862
227000 1 0.000862
230000 1 0.000862
231000 1 0.000862
238000 1 0.000862
248000 1 0.000862
248000 1 0.000862
249000 1 0.000862
256000 1 0.000862
259000 1 0.000862
262000 1 0.000862
269000 1 0.000862
272000 1 0.000862
274000 1 0.000862
279000 1 0.000862
280000 1 0.000862
293000 1 0.000862
305000 1 0.000862
311000 1 0.000862
327000 1 0.000862
332000 1 0.000862
340000 1 0.000862

CL165 ----> CL11

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No. of shared pairs: :390

CL165 ----> CL51

image

No. of shared pairs: :285

CL165 ----> CL78

image

No. of shared pairs: :57

CL165 ----> CL352

image

No. of shared pairs: :33

CL165 ----> CL869

image

No. of shared pairs: :13

CL165 ----> CL7

image

No. of shared pairs: :12

CL165 ----> CL30

image

No. of shared pairs: :11

CL165 ----> CL86

image

No. of shared pairs: :10