Cluster no. 166

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Cluster is part of supercluster: 81

Cluster characteristics:

size 8298
size_real 8298
ecount 40537
supercluster 81
annotations_summary 18.59% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
11.53% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
9.70% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
6.85% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG
5.10% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
3.54% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-PROT
1.19% organelle/mitochondria
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/chromo-unclass:Ty3-RT
pair_completeness 0.724438902743142
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000361532899493854
satellite_probability 1.17014641654426e-22
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 99 0.01193
Tekay Ty3-CHDII Tekay Ty3-CHDII 423 0.05098
Tekay Ty3-GAG Tekay Ty3-GAG 568 0.06845
CRM Ty3-INT CRM Ty3-INT 1 0.00012
Tekay Ty3-INT Tekay Ty3-INT 1543 0.18595
Tekay Ty3-PROT Tekay Ty3-PROT 294 0.03543
Tekay Ty3-RH Tekay Ty3-RH 805 0.09701
Reina Ty3-RT Reina Ty3-RT 1 0.00012
Tekay Ty3-RT Tekay Ty3-RT 957 0.11533
chromo-unclass Ty3-RT chromo-unclass Ty3-RT 1 0.00012

clusters with similarity:

Cluster Number of similarity hits
198 4
178 2
47 1
145 1
266 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
198 18 0.0169
2960 12 0.0179
266 10 0.0118
5950 9 0.0135
9590 9 0.0135
94 6 0.00627
2110 6 0.00894
2550 6 0.00896
2680 6 0.00898
7940 6 0.009
9700 6 0.00899
216 5 0.00537
9200 5 0.00749
13900 5 0.00751
64 4 0.00264
162 4 0.00221
1620 4 0.00593
2680 4 0.00596
4790 4 0.00599
5310 4 0.00597
11200 4 0.006
12100 4 0.00602
14900 4 0.00601
15000 4 0.00601
3 3 0.000714
8 3 0.00136
12 3 0.000649
15 3 0.00101
17 3 0.000476
36 3 0.00139
41 3 0.000846
50 3 0.00134
66 3 0.000883
118 3 0.00208
1350 3 0.00442
1530 3 0.00449
2210 3 0.00451
3200 3 0.00448
5620 3 0.00448
7150 3 0.00451
9810 3 0.0045
14900 3 0.0045
18000 3 0.0045
18800 3 0.00451
26100 3 0.00451
28600 3 0.00451
47600 3 0.00451
48200 3 0.00451
69800 3 0.00451
77700 3 0.00451
1 2 0.000489
4 2 0.000501
7 2 0.000394
14 2 0.00051
20 2 0.000499
21 2 0.000686
22 2 0.000606
26 2 0.00075
30 2 0.000478
32 2 0.000957
35 2 0.000526
39 2 0.000972
45 2 0.000616
46 2 0.000917
48 2 0.000525
55 2 0.000465
59 2 0.00116
60 2 0.00118
80 2 0.00101
83 2 0.0011
91 2 0.00152
100 2 0.00127
101 2 0.000934
132 2 0.00144
163 2 0.00104
213 2 0.00116
238 2 0.00212
2040 2 0.00297
2370 2 0.00299
2520 2 0.00298
5580 2 0.003
6810 2 0.003
12000 2 0.00301
13500 2 0.00301
14300 2 0.00301
14700 2 0.00301
14900 2 0.003
15400 2 0.003
18000 2 0.00301
18400 2 0.00301
19300 2 0.003
20800 2 0.00301
21100 2 0.003
24100 2 0.00301
24600 2 0.00301
25400 2 0.00301
28500 2 0.00301
28700 2 0.00301
29100 2 0.00301
30200 2 0.00301
30600 2 0.00301
35100 2 0.00301
45600 2 0.00301
50800 2 0.00301
53000 2 0.00301
56500 2 0.00301
61800 2 0.00301
66500 2 0.00301
70500 2 0.00301
79300 2 0.00301
1e+05 2 0.00301
102000 2 0.00301
107000 2 0.00301
112000 2 0.00301
118000 2 0.00301
142000 2 0.00301
150000 2 0.00301
152000 2 0.00301
174000 2 0.00301
178000 2 0.00301
181000 2 0.00301
196000 2 0.00301
199000 2 0.00301
216000 2 0.00301
217000 2 0.00301
226000 2 0.00301
227000 2 0.00301
252000 2 0.00301
256000 2 0.00301
271000 2 0.00301
307000 2 0.00301
314000 2 0.00301
326000 2 0.00301
329000 2 0.00301
336000 2 0.00301
339000 2 0.00301
6 1 0.000229
9 1 0.00031
10 1 0.000502
11 1 0.000243
18 1 0.000412
23 1 0.000341
24 1 0.000275
27 1 0.000516
29 1 0.000415
37 1 0.000271
38 1 0.000549
40 1 0.000242
42 1 0.000416
43 1 0.000314
44 1 0.000279
47 1 0.000325
49 1 0.000434
52 1 0.00041
53 1 0.000289
54 1 0.000615
58 1 0.000682
62 1 0.000306
63 1 0.00028
67 1 0.000363
74 1 0.000483
76 1 0.000508
79 1 0.000333
82 1 0.000619
85 1 0.000512
87 1 0.000516
92 1 0.000795
96 1 0.000613
98 1 0.000656
99 1 0.000757
102 1 0.00034
108 1 0.000691
110 1 0.000662
116 1 0.000375
117 1 0.000553
122 1 0.000541
123 1 6e-04
125 1 0.000717
128 1 0.00074
130 1 0.000376
133 1 0.000298
149 1 0.000755
157 1 0.000704
161 1 0.000513
169 1 0.000726
172 1 0.000554
177 1 0.000914
178 1 0.000892
192 1 0.00129
200 1 0.000671
207 1 0.00109
211 1 0.000859
212 1 0.00101
215 1 0.000951
218 1 0.00115
226 1 0.00115
232 1 0.000951
234 1 0.00122
239 1 0.00103
247 1 0.000868
262 1 0.00139
269 1 0.00126
303 1 0.00131
316 1 0.00136
398 1 0.00146
531 1 0.00144
574 1 0.00148
591 1 0.00145
663 1 0.00148
753 1 0.00145
1360 1 0.00148
1550 1 0.00149
2860 1 0.0015
2860 1 0.00149
3180 1 0.0015
3760 1 0.0015
3800 1 0.00149
4610 1 0.00149
4690 1 0.0015
4740 1 0.0015
4910 1 0.0015
5300 1 0.00149
5570 1 0.0015
5810 1 0.0015
7340 1 0.0015
8000 1 0.0015
8440 1 0.0015
8960 1 0.0015
9170 1 0.0015
9240 1 0.0015
9430 1 0.0015
9460 1 0.0015
10200 1 0.0015
10700 1 0.0015
10700 1 0.0015
10800 1 0.0015
12000 1 0.0015
13700 1 0.0015
15600 1 0.0015
16300 1 0.0015
16800 1 0.0015
17900 1 0.0015
18800 1 0.00151
21700 1 0.0015
21900 1 0.0015
22300 1 0.0015
22500 1 0.0015
22600 1 0.0015
22800 1 0.0015
23400 1 0.0015
24600 1 0.0015
25200 1 0.00151
25700 1 0.0015
25700 1 0.0015
26000 1 0.0015
26100 1 0.0015
26300 1 0.0015
26400 1 0.0015
27100 1 0.0015
27400 1 0.0015
27700 1 0.0015
28100 1 0.0015
31200 1 0.00151
31800 1 0.00151
32300 1 0.00151
32700 1 0.00151
32800 1 0.00151
33900 1 0.00151
34100 1 0.0015
34400 1 0.00151
35700 1 0.0015
39600 1 0.00151
39800 1 0.0015
40100 1 0.00151
40500 1 0.00151
40700 1 0.0015
41000 1 0.00151
43200 1 0.00151
43300 1 0.0015
43500 1 0.00151
44000 1 0.00151
45100 1 0.00151
45300 1 0.0015
46500 1 0.00151
47200 1 0.0015
48800 1 0.00151
48800 1 0.0015
49100 1 0.0015
49700 1 0.0015
50400 1 0.0015
52000 1 0.0015
52300 1 0.00151
52300 1 0.0015
54200 1 0.0015
54300 1 0.0015
55400 1 0.00151
56700 1 0.0015
56800 1 0.00151
58500 1 0.0015
59300 1 0.00151
60400 1 0.0015
60700 1 0.0015
61800 1 0.00151
64800 1 0.00151
67900 1 0.00151
68500 1 0.00151
68700 1 0.0015
69800 1 0.0015
69900 1 0.00151
70000 1 0.00151
70100 1 0.0015
70600 1 0.00151
70900 1 0.00151
72100 1 0.00151
72300 1 0.00151
73400 1 0.0015
76300 1 0.00151
76300 1 0.00151
76800 1 0.0015
76900 1 0.00151
77000 1 0.00151
77600 1 0.0015
77700 1 0.0015
78100 1 0.0015
79600 1 0.0015
79700 1 0.0015
79700 1 0.00151
79900 1 0.00151
83000 1 0.0015
83100 1 0.0015
83200 1 0.0015
83700 1 0.00151
83800 1 0.0015
84600 1 0.0015
85000 1 0.00151
87400 1 0.00151
88000 1 0.00151
89100 1 0.00151
93700 1 0.00151
94300 1 0.00151
96300 1 0.00151
97300 1 0.00151
98100 1 0.00151
98600 1 0.00151
103000 1 0.00151
104000 1 0.00151
108000 1 0.00151
109000 1 0.00151
112000 1 0.00151
113000 1 0.00151
116000 1 0.00151
116000 1 0.00151
117000 1 0.00151
120000 1 0.00151
120000 1 0.00151
126000 1 0.00151
127000 1 0.00151
127000 1 0.00151
129000 1 0.00151
136000 1 0.00151
157000 1 0.00151
157000 1 0.00151
161000 1 0.00151
162000 1 0.00151
162000 1 0.00151
165000 1 0.00151
167000 1 0.00151
169000 1 0.00151
171000 1 0.00151
173000 1 0.00151
179000 1 0.00151
180000 1 0.00151
182000 1 0.00151
187000 1 0.00151
188000 1 0.00151
193000 1 0.00151
193000 1 0.00151
195000 1 0.00151
198000 1 0.00151
201000 1 0.00151
201000 1 0.00151
213000 1 0.00151
215000 1 0.00151
217000 1 0.00151
221000 1 0.00151
226000 1 0.00151
227000 1 0.00151
227000 1 0.00151
230000 1 0.00151
233000 1 0.00151
234000 1 0.00151
244000 1 0.00151
247000 1 0.00151
250000 1 0.00151
251000 1 0.00151
252000 1 0.00151
254000 1 0.00151
257000 1 0.00151
257000 1 0.00151
257000 1 0.00151
260000 1 0.00151
267000 1 0.00151
267000 1 0.00151
269000 1 0.00151
276000 1 0.00151
280000 1 0.00151
289000 1 0.00151
293000 1 0.00151
295000 1 0.00151
297000 1 0.00151
299000 1 0.00151
303000 1 0.00151
305000 1 0.00151
306000 1 0.00151
317000 1 0.00151
324000 1 0.00151
338000 1 0.00151
342000 1 0.00151
342000 1 0.00151
347000 1 0.00151
348000 1 0.00151

CL166 ----> CL198

image

No. of shared pairs: :18

CL166 ----> CL2961

image

No. of shared pairs: :12

CL166 ----> CL266

image

No. of shared pairs: :10