Cluster no. 168

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Cluster is part of supercluster: 12

Cluster characteristics:

size 8062
size_real 8062
ecount 2241058
supercluster 12
annotations_summary 50.50% Class_I/LTR/Ty1_copia/Tork:Ty1-RH
2.37% Class_I/LTR/Ty1_copia/Bryco:Ty1-RH
1.64% Class_I/LTR/Ty1_copia/Ivana:Ty1-RH
1.14% Class_I/LTR/Ty1_copia/Ikeros:Ty1-RH
0.81% Class_I/LTR/Ty1_copia/SIRE:Ty1-RH
0.40% Class_I/LTR/Ty1_copia/Angela:Ty1-RH
0.11% Class_I/LTR/Ty1_copia/TAR:Ty1-RH
0.11% Class_I/LTR/Ty1_copia/Alesia:Ty1-RH
0.10% Class_I/LTR/Ty1_copia/Ale:Ty1-RH
0.04% Class_I/LTR/Ty1_copia/Gymco-I:Ty1-RH
0.02% Class_I/LTR/Ty1_copia/Osser:Ty1-RH
0.02% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-RH
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
pair_completeness 0.562705950765652
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00409327710245597
satellite_probability 1.29477276776204e-21
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Ale Ty1-RH Ale Ty1-RH 8 0.00099
Alesia Ty1-RH Alesia Ty1-RH 9 0.00112
Angela Ty1-RH Angela Ty1-RH 32 0.00397
Bryco Ty1-RH Bryco Ty1-RH 191 0.02369
Gymco-I Ty1-RH Gymco-I Ty1-RH 3 0.00037
Gymco-II Ty1-RH Gymco-II Ty1-RH 2 0.00025
Ikeros Ty1-RH Ikeros Ty1-RH 92 0.01141
Ivana Ty1-RH Ivana Ty1-RH 132 0.01637
Osser Ty1-RH Osser Ty1-RH 2 0.00025
SIRE Ty1-RH SIRE Ty1-RH 65 0.00806
TAR Ty1-RH TAR Ty1-RH 9 0.00112
Tork Ty1-RH Tork Ty1-RH 4071 0.50496
Reina Ty3-INT Reina Ty3-INT 1 0.00012
Athila Ty3-RT Athila Ty3-RT 1 0.00012

clusters with similarity:

Cluster Number of similarity hits
127 43500
130 2940
45 2
306 2
3 1
6 1
11 1
30 1
47 1
66 1
69 1
85 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
127 908 0.396
130 689 0.221
17 7 0.00103
45 7 0.00189
29 6 0.00209
76 6 0.00247
9 5 0.00136
28 5 0.002
30 5 0.00108
48 5 0.00117
102 5 0.00147
153 5 0.00208
4 4 0.000897
7 4 0.000722
12 4 0.000786
15 4 0.00117
20 4 0.000894
22 4 0.00106
31 4 0.000664
2 3 0.000456
11 3 0.000655
13 3 0.00118
21 3 0.000887
23 3 0.000882
24 3 0.000731
26 3 0.000958
35 3 0.000703
63 3 0.000743
82 3 0.00144
85 3 0.00124
86 3 0.000852
95 3 0.00146
100 3 0.00147
109 3 0.00166
126 3 0.00134
128 3 0.00165
141 3 0.00128
158 3 0.00145
160 3 0.00153
189 3 0.00145
3 2 0.000429
6 2 0.000415
16 2 0.000557
33 2 0.000835
37 2 0.000482
41 2 0.000499
49 2 0.000723
52 2 0.000688
65 2 0.000842
66 2 0.000518
79 2 0.000577
88 2 0.000592
98 2 0.00101
99 2 0.00112
101 2 0.000767
103 2 0.00065
105 2 0.000786
112 2 0.00113
113 2 0.000839
134 2 0.00085
157 2 0.00106
163 2 0.000839
169 2 0.00109
195 2 0.00134
198 2 0.00131
245 2 0.00116
109000 2 0.00177
8 1 0.000375
18 1 0.000346
19 1 0.000339
25 1 0.000345
27 1 0.000416
32 1 0.000391
34 1 0.000292
36 1 0.000381
40 1 0.000218
42 1 0.000348
43 1 0.000274
44 1 0.000247
51 1 0.000255
53 1 0.000255
56 1 0.000741
57 1 0.000471
58 1 0.000518
59 1 0.000458
67 1 0.000311
68 1 0.000395
69 1 0.000465
70 1 0.00051
72 1 0.000424
74 1 0.000394
80 1 0.00041
84 1 0.000379
87 1 0.000416
89 1 0.000416
91 1 0.000562
92 1 0.00058
94 1 0.000703
107 1 0.000552
108 1 0.000523
116 1 0.000319
118 1 0.000524
119 1 0.000604
120 1 0.000419
121 1 0.000614
125 1 0.000538
129 1 0.000586
136 1 0.000588
137 1 0.000489
142 1 0.000517
144 1 0.000617
145 1 0.000399
147 1 0.00027
156 1 0.000513
159 1 0.000523
164 1 0.000747
167 1 0.00041
172 1 0.00044
176 1 0.000622
182 1 0.000527
183 1 0.00053
191 1 0.000488
196 1 0.000462
197 1 0.000494
213 1 0.000455
219 1 0.000702
222 1 0.00067
229 1 0.000576
232 1 0.000659
233 1 0.00078
237 1 0.000693
253 1 0.000666
263 1 0.00062
282 1 0.00078
306 1 0.000774
307 1 0.000806
339 1 0.000827
341 1 0.000819
366 1 0.000832
449 1 0.000854
492 1 0.000851
646 1 0.000864
717 1 0.000876
755 1 0.000875
807 1 0.00087
872 1 0.000869
1350 1 0.000875
1420 1 0.000872
2000 1 0.000881
6820 1 0.000883
7520 1 0.000884
15400 1 0.000884
16600 1 0.000885
16700 1 0.000885
18900 1 0.000886
19800 1 0.000885
23900 1 0.000885
25700 1 0.000885
27600 1 0.000885
28800 1 0.000885
31000 1 0.000886
32000 1 0.000885
63200 1 0.000886
72400 1 0.000886
77100 1 0.000885
77300 1 0.000886
119000 1 0.000886
173000 1 0.000886
205000 1 0.000886
223000 1 0.000886
251000 1 0.000886
259000 1 0.000886
260000 1 0.000886
273000 1 0.000886
279000 1 0.000886
303000 1 0.000886
315000 1 0.000886
324000 1 0.000886
335000 1 0.000886
337000 1 0.000886

CL168 ----> CL127

image

No. of shared pairs: :908

CL168 ----> CL130

image

No. of shared pairs: :689