Cluster no. 169

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Cluster is part of supercluster: 38

Cluster characteristics:

size 8024
size_real 8024
ecount 318827
supercluster 38
annotations_summary 0.01% Class_I/LTR/Ty3_gypsy/chromovirus/chromo-unclass:Ty3-RT
pair_completeness 0.697482547070023
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00162013958125623
satellite_probability 1.64859681984477e-22
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
chromo-unclass Ty3-RT chromo-unclass Ty3-RT 1 0.00012

clusters with similarity:

Cluster Number of similarity hits
154 467
109 221
85 3
400 2
5 1
10 1
15 1
18 1
20 1
31 1
33 1
66 1
74 1
97 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
154 178 0.142
109 113 0.0813
923 21 0.0286
197 17 0.0105
17 9 0.00142
31 9 0.0016
47 9 0.00288
2 8 0.0013
4 8 0.00198
44 8 0.0022
6 7 0.00159
18 7 0.00283
19 7 0.00276
24 7 0.0019
33 7 0.00353
1 6 0.00145
3 6 0.00141
66 6 0.00174
3760 6 0.00829
7 5 0.000975
12 5 0.00107
13 5 0.00235
30 5 0.00118
46 5 0.00224
86 5 0.00161
152 5 0.00206
167 5 0.00247
185 5 0.00336
1050 5 0.00684
1060 5 0.00678
5 4 0.00179
15 4 0.00133
16 4 0.00126
21 4 0.00135
22 4 0.00119
25 4 0.00161
26 4 0.00147
32 4 0.00187
40 4 0.000957
42 4 0.00163
84 4 0.0018
106 4 0.00192
117 4 0.00215
126 4 0.00219
6080 4 0.00556
38800 4 0.00558
9 3 0.000916
20 3 0.000739
23 3 0.001
28 3 0.00143
29 3 0.00122
49 3 0.00127
50 3 0.00131
53 3 0.000855
75 3 0.000828
85 3 0.0015
88 3 0.00101
90 3 0.000981
91 3 0.00219
97 3 0.00134
103 3 0.00113
138 3 0.0021
143 3 0.0016
147 3 0.000912
148 3 0.00173
159 3 0.002
195 3 0.00279
239 3 0.00294
9480 3 0.00418
12000 3 0.00417
18800 3 0.00418
11 2 0.00048
36 2 0.000905
41 2 0.000556
43 2 0.000619
45 2 0.000606
51 2 0.000571
56 2 0.00214
59 2 0.00113
73 2 0.00131
74 2 0.000942
76 2 0.000991
81 2 0.00069
83 2 0.00107
87 2 0.00101
89 2 0.001
93 2 0.00137
95 2 0.00122
99 2 0.00146
102 2 0.000667
112 2 0.00147
121 2 0.00165
123 2 0.00116
128 2 0.00143
130 2 0.000738
133 2 0.000587
134 2 0.00103
136 2 0.00155
139 2 0.00112
140 2 0.000766
141 2 0.00104
150 2 0.0012
163 2 0.00101
168 2 0.00109
176 2 0.00167
177 2 0.00174
179 2 0.00153
181 2 0.00138
186 2 0.00102
191 2 0.00122
213 2 0.00112
217 2 0.00164
231 2 0.00222
317 2 0.00262
376 2 0.00247
409 2 0.00268
627 2 0.00266
9020 2 0.00278
11500 2 0.00279
15300 2 0.00279
59100 2 0.00279
80400 2 0.00279
156000 2 0.00279
10 1 0.00049
14 1 0.000252
35 1 0.000259
38 1 0.000534
39 1 0.000474
48 1 0.000259
52 1 0.000401
57 1 0.000584
60 1 0.000572
61 1 0.000435
62 1 0.000301
63 1 0.000276
64 1 0.000638
65 1 0.000509
67 1 0.000357
70 1 0.000647
71 1 0.000344
78 1 0.000317
79 1 0.000327
80 1 0.000494
82 1 0.000599
92 1 0.000763
94 1 0.000991
96 1 0.000594
101 1 0.000456
105 1 0.000469
108 1 0.000667
110 1 0.00064
113 1 0.000508
115 1 0.000412
119 1 0.000804
120 1 0.000506
122 1 0.000526
127 1 0.000532
129 1 0.000773
142 1 0.000658
144 1 0.000828
145 1 0.000477
149 1 0.000726
153 1 0.000504
155 1 0.000697
156 1 0.000651
157 1 0.000679
158 1 0.000606
161 1 5e-04
164 1 0.00108
165 1 0.000534
166 1 0.000726
172 1 0.000538
182 1 0.000673
183 1 0.000679
184 1 0.000897
196 1 0.000571
200 1 0.000649
208 1 0.000903
211 1 0.000822
212 1 0.000959
218 1 0.00109
224 1 0.00125
227 1 0.000986
233 1 0.00115
243 1 0.000767
264 1 0.00106
268 1 0.00104
283 1 0.00121
286 1 0.00093
295 1 0.00114
305 1 0.00132
306 1 0.00114
341 1 0.00124
346 1 0.00126
348 1 0.00132
379 1 0.00134
400 1 0.00129
405 1 0.00129
426 1 0.00127
449 1 0.00132
598 1 0.00138
675 1 0.00137
856 1 0.00137
980 1 0.00136
1050 1 0.00138
1100 1 0.00136
1370 1 0.00138
1500 1 0.00138
1700 1 0.00138
2090 1 0.00137
2120 1 0.00138
2120 1 0.00138
2170 1 0.00138
2260 1 0.00138
2280 1 0.00139
2440 1 0.00138
2510 1 0.00138
3120 1 0.00139
3490 1 0.00138
4030 1 0.00139
4180 1 0.00139
4980 1 0.00139
5670 1 0.00139
5770 1 0.00139
5880 1 0.00139
6150 1 0.00139
8080 1 0.00139
9670 1 0.00139
9800 1 0.00139
11600 1 0.00139
13500 1 0.00139
15800 1 0.00139
16400 1 0.00139
17800 1 0.00139
19900 1 0.00139
24200 1 0.00139
24400 1 0.0014
27700 1 0.0014
27800 1 0.0014
29200 1 0.00139
29500 1 0.0014
33300 1 0.0014
33900 1 0.00139
34800 1 0.00139
35900 1 0.0014
39900 1 0.0014
42100 1 0.0014
43200 1 0.00139
43900 1 0.0014
44700 1 0.0014
47200 1 0.0014
47300 1 0.0014
54300 1 0.0014
56800 1 0.0014
59700 1 0.0014
60100 1 0.0014
62600 1 0.0014
63700 1 0.0014
64400 1 0.0014
65200 1 0.0014
66700 1 0.0014
68800 1 0.0014
69200 1 0.0014
70200 1 0.0014
70800 1 0.0014
70900 1 0.0014
71500 1 0.0014
74900 1 0.0014
75900 1 0.0014
82600 1 0.0014
87300 1 0.0014
90300 1 0.0014
114000 1 0.0014
124000 1 0.0014
130000 1 0.0014
146000 1 0.0014
174000 1 0.0014
195000 1 0.0014
195000 1 0.0014
197000 1 0.0014
198000 1 0.0014
203000 1 0.0014
208000 1 0.0014
209000 1 0.0014
213000 1 0.0014
213000 1 0.0014
213000 1 0.0014
228000 1 0.0014
242000 1 0.0014
246000 1 0.0014
248000 1 0.0014
252000 1 0.0014
260000 1 0.0014
277000 1 0.0014
278000 1 0.0014
292000 1 0.0014
293000 1 0.0014
293000 1 0.0014
319000 1 0.0014
321000 1 0.0014
325000 1 0.0014
333000 1 0.0014

CL169 ----> CL154

image

No. of shared pairs: :178

CL169 ----> CL109

image

No. of shared pairs: :113

CL169 ----> CL923

image

No. of shared pairs: :21

CL169 ----> CL197

image

No. of shared pairs: :17