Cluster no. 172

Go back to cluster table

Cluster is part of supercluster: 86

Cluster characteristics:

size 7717
size_real 7717
ecount 53076
supercluster 86
annotations_summary 17.83% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT
9.07% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT
8.33% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RH
3.80% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-PROT
1.84% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG
1.27% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT
1.24% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-CHDII
0.45% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-RT
0.32% organelle/mitochondria
0.17% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
0.12% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-RT
0.08% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH
0.08% Class_I/LTR/Ty3_gypsy/chromovirus/Chlamyvir:Ty3-RT
0.04% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/chromo-unclass:Ty3-RT
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-RH
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/chromo-outgroup:Ty3-RT
pair_completeness 0.542782886845262
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000388752105740573
satellite_probability 1.65508917325132e-21
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 25 0.00324
CRM Ty3-CHDII CRM Ty3-CHDII 96 0.01244
CRM Ty3-GAG CRM Ty3-GAG 142 0.01840
CRM Ty3-INT CRM Ty3-INT 1376 0.17831
Reina Ty3-INT Reina Ty3-INT 3 0.00039
Tekay Ty3-INT Tekay Ty3-INT 2 0.00026
CRM Ty3-PROT CRM Ty3-PROT 293 0.03797
CRM Ty3-RH CRM Ty3-RH 643 0.08332
Galadriel Ty3-RH Galadriel Ty3-RH 2 0.00026
Reina Ty3-RH Reina Ty3-RH 6 0.00078
Tekay Ty3-RH Tekay Ty3-RH 1 0.00013
CRM Ty3-RT CRM Ty3-RT 700 0.09071
Chlamyvir Ty3-RT Chlamyvir Ty3-RT 6 0.00078
Galadriel Ty3-RT Galadriel Ty3-RT 35 0.00454
Reina Ty3-RT Reina Ty3-RT 98 0.01270
Tcn1 Ty3-RT Tcn1 Ty3-RT 9 0.00117
Tekay Ty3-RT Tekay Ty3-RT 13 0.00168
chromo-outgroup Ty3-RT chromo-outgroup Ty3-RT 1 0.00013
chromo-unclass Ty3-RT chromo-unclass Ty3-RT 2 0.00026

clusters with similarity:

Cluster Number of similarity hits
36 7
89 2
26 1
100 1
170 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
235 77 0.0434
17 15 0.00221
20 14 0.00312
170 11 0.00501
189 11 0.00526
7 10 0.0018
2240 6 0.0052
2 5 0.000758
14 5 0.00114
15 5 0.00145
130 5 0.00159
186 5 0.00209
6 4 0.000827
22 4 0.00106
24 4 0.000971
36 4 0.00152
49 4 0.00144
63 4 0.000987
86 4 0.00113
197 4 0.00196
4 3 0.000671
9 3 0.00081
16 3 0.000832
23 3 0.000878
30 3 0.000643
31 3 0.000497
33 3 0.00124
45 3 0.000805
48 3 0.000699
74 3 0.00118
81 3 0.000902
85 3 0.00123
90 3 0.00086
95 3 0.00145
110 3 0.00151
115 3 0.00105
119 3 0.00179
161 3 0.00124
181 3 0.0016
1080 3 0.00258
11300 3 0.00262
26800 3 0.00262
3 2 0.000427
8 2 0.000746
19 2 0.000675
21 2 0.000589
26 2 0.000636
28 2 0.000793
34 2 0.000582
41 2 0.000497
47 2 0.000562
50 2 0.000734
51 2 0.000509
59 2 0.00091
61 2 0.000734
64 2 0.001
67 2 0.000619
72 2 0.000843
78 2 0.000558
84 2 0.000754
87 2 0.000827
97 2 0.000751
99 2 0.00111
114 2 0.00114
133 2 0.000521
143 2 0.000867
144 2 0.00122
153 2 0.000828
179 2 0.00115
195 2 0.00133
196 2 0.000918
245 2 0.00115
267 2 0.00132
276 2 0.00131
8580 2 0.00174
14000 2 0.00175
18700 2 0.00175
22400 2 0.00175
72500 2 0.00175
91200 2 0.00175
116000 2 0.00175
128000 2 0.00175
244000 2 0.00175
257000 2 0.00175
267000 2 0.00175
289000 2 0.00175
321000 2 0.00175
332000 2 0.00175
11 1 0.000218
13 1 0.000391
18 1 0.000344
29 1 0.000346
40 1 0.000217
46 1 0.000376
53 1 0.000254
56 1 0.000733
58 1 0.000513
65 1 0.000418
66 1 0.000258
68 1 0.000393
71 1 3e-04
75 1 0.000247
80 1 0.000408
92 1 0.000575
93 1 0.000528
98 1 0.000499
100 1 0.000486
102 1 0.000292
104 1 0.000513
108 1 0.000519
111 1 0.000275
113 1 0.000417
120 1 0.000416
125 1 0.000533
126 1 0.000444
132 1 0.000534
136 1 0.000583
139 1 0.000451
140 1 0.000329
146 1 0.000537
151 1 0.000497
152 1 0.000351
157 1 0.000526
163 1 0.000417
166 1 0.000554
167 1 0.000407
168 1 0.00044
169 1 0.000538
173 1 0.000616
176 1 0.000616
177 1 0.000635
178 1 0.000624
184 1 0.000648
185 1 0.000521
187 1 0.000568
200 1 0.000507
204 1 0.000689
205 1 0.000566
211 1 0.000608
217 1 0.000606
219 1 0.000694
255 1 0.000633
259 1 0.00074
264 1 0.000731
265 1 0.00079
266 1 0.000755
269 1 0.000785
313 1 0.00079
321 1 0.000828
332 1 0.000809
364 1 0.000826
418 1 0.000832
449 1 0.000843
588 1 0.000852
710 1 0.000856
798 1 0.000864
815 1 0.000854
822 1 0.000861
1070 1 0.000861
1350 1 0.000864
2340 1 0.000871
2640 1 0.000871
3010 1 0.000869
4980 1 0.000871
5320 1 0.000871
6320 1 0.000872
7020 1 0.00087
7600 1 0.000873
19000 1 0.000874
21200 1 0.000874
23000 1 0.000873
25400 1 0.000873
28600 1 0.000873
29100 1 0.000873
34300 1 0.000874
42300 1 0.000874
42500 1 0.000874
51100 1 0.000874
52200 1 0.000874
52700 1 0.000874
54400 1 0.000873
55900 1 0.000874
56500 1 0.000874
62400 1 0.000874
62700 1 0.000873
63600 1 0.000874
64600 1 0.000874
70700 1 0.000874
73000 1 0.000873
74100 1 0.000874
74600 1 0.000874
77400 1 0.000874
79700 1 0.000874
81100 1 0.000874
81100 1 0.000874
104000 1 0.000874
105000 1 0.000874
106000 1 0.000874
107000 1 0.000874
107000 1 0.000874
130000 1 0.000874
133000 1 0.000874
134000 1 0.000874
136000 1 0.000874
141000 1 0.000874
143000 1 0.000874
144000 1 0.000874
145000 1 0.000874
146000 1 0.000874
153000 1 0.000874
153000 1 0.000874
158000 1 0.000874
165000 1 0.000874
168000 1 0.000874
169000 1 0.000874
171000 1 0.000874
174000 1 0.000874
181000 1 0.000874
181000 1 0.000874
186000 1 0.000874
192000 1 0.000874
195000 1 0.000874
199000 1 0.000874
203000 1 0.000874
205000 1 0.000874
205000 1 0.000874
206000 1 0.000874
213000 1 0.000874
216000 1 0.000874
227000 1 0.000874
234000 1 0.000874
242000 1 0.000874
244000 1 0.000874
245000 1 0.000874
252000 1 0.000874
252000 1 0.000874
253000 1 0.000874
258000 1 0.000874
261000 1 0.000874
270000 1 0.000874
270000 1 0.000874
278000 1 0.000874
279000 1 0.000874
279000 1 0.000874
280000 1 0.000874
283000 1 0.000874
288000 1 0.000874
291000 1 0.000874
293000 1 0.000874
301000 1 0.000874
329000 1 0.000874
333000 1 0.000874
348000 1 0.000874

CL172 ----> CL235

image

No. of shared pairs: :77

CL172 ----> CL17

image

No. of shared pairs: :15

CL172 ----> CL20

image

No. of shared pairs: :14

CL172 ----> CL170

image

No. of shared pairs: :11

CL172 ----> CL189

image

No. of shared pairs: :11

CL172 ----> CL7

image

No. of shared pairs: :10