Cluster no. 174

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Cluster is part of supercluster: 88

Cluster characteristics:

size 7447
size_real 7447
ecount 69016
supercluster 88
annotations_summary 0.03% organelle/plastid
pair_completeness 0.561543300482281
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000537129045253122
satellite_probability 1.29477276776204e-21
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 2 0.00027

clusters with similarity:

Cluster Number of similarity hits
90 13
17 1
31 1
167 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
90 162 0.0478
167 153 0.0649
23 8 0.00241
4 7 0.0016
17 7 0.00105
24 7 0.00174
3 6 0.00131
9 6 0.00166
5420 6 0.00572
97 5 0.00195
14 4 0.000929
22 4 0.00109
33 4 0.00173
49 4 0.00149
63 4 0.00101
1430 4 0.00378
1 3 0.000671
16 3 0.000855
29 3 0.00107
31 3 0.000505
32 3 0.00121
67 3 0.000957
84 3 0.00117
96 3 0.00149
99 3 0.00176
110 3 0.00158
130 3 0.000987
11500 3 0.00286
24500 3 0.00286
24700 3 0.00286
45700 3 0.00287
13 2 0.000814
18 2 0.000712
25 2 0.00071
37 2 0.000492
39 2 0.00082
48 2 0.000477
50 2 0.000761
59 2 0.000952
66 2 0.000529
68 2 0.000817
74 2 0.000815
75 2 0.000506
86 2 0.000581
102 2 0.000601
114 2 0.0012
132 2 0.00113
134 2 0.000881
147 2 0.000553
156 2 0.00107
185 2 0.0011
197 2 0.00103
3420 2 0.0019
6960 2 0.0019
14400 2 0.00191
17900 2 0.00191
19500 2 0.00191
20700 2 0.00191
22600 2 0.00191
22700 2 0.00191
25900 2 0.00191
33000 2 0.00191
41400 2 0.00191
45000 2 0.00191
78600 2 0.00191
90300 2 0.00191
91100 2 0.00191
106000 2 0.00191
116000 2 0.00191
129000 2 0.00191
149000 2 0.00191
154000 2 0.00191
172000 2 0.00191
175000 2 0.00191
184000 2 0.00191
209000 2 0.00191
219000 2 0.00191
234000 2 0.00191
247000 2 0.00191
250000 2 0.00191
257000 2 0.00191
306000 2 0.00191
307000 2 0.00191
317000 2 0.00191
317000 2 0.00191
2 1 0.000154
5 1 0.00039
6 1 0.000211
8 1 0.000387
10 1 0.000421
11 1 0.000222
15 1 0.000299
20 1 0.000228
21 1 0.000303
27 1 0.000431
35 1 0.000239
38 1 0.000454
40 1 0.000222
42 1 0.000359
45 1 0.000276
47 1 0.000289
51 1 0.000261
53 1 0.00026
54 1 0.000498
58 1 0.000541
60 1 0.000481
61 1 0.000381
70 1 0.000533
72 1 0.000439
78 1 0.000287
79 1 0.000295
94 1 0.000747
105 1 0.000406
107 1 0.000579
109 1 0.000581
117 1 0.000457
118 1 0.000548
119 1 0.000635
129 1 0.000616
131 1 0.000767
133 1 0.000267
138 1 0.000568
139 1 0.000472
140 1 0.00034
146 1 0.000567
150 1 5e-04
151 1 0.000523
153 1 0.000432
154 1 0.000633
159 1 0.000547
160 1 0.000533
163 1 0.000435
165 1 0.000454
175 1 0.000618
176 1 0.000656
179 1 0.000612
181 1 0.000562
183 1 0.000555
187 1 0.000601
189 1 0.000502
190 1 0.000559
193 1 0.000671
194 1 0.000818
196 1 0.000481
199 1 0.000764
206 1 0.00067
211 1 0.000646
212 1 0.000728
213 1 0.000473
227 1 0.000743
243 1 0.000612
255 1 0.000675
257 1 0.000856
273 1 0.000678
290 1 0.000901
303 1 0.000873
339 1 0.000888
347 1 0.00084
352 1 0.000833
358 1 0.000915
365 1 0.000894
506 1 0.000934
539 1 0.000941
670 1 0.000934
686 1 0.000936
1250 1 0.000943
2150 1 0.00095
2630 1 0.000951
4130 1 0.000951
4230 1 0.000951
7000 1 0.000953
7720 1 0.000952
8100 1 0.000954
9010 1 0.000953
9180 1 0.000952
9570 1 0.000952
9900 1 0.000954
11500 1 0.000955
11800 1 0.000955
11900 1 0.000953
16900 1 0.000956
17800 1 0.000956
20000 1 0.000955
20900 1 0.000955
22300 1 0.000954
24000 1 0.000955
29400 1 0.000955
32000 1 0.000955
33300 1 0.000955
34500 1 0.000956
38400 1 0.000956
40000 1 0.000956
45100 1 0.000955
46300 1 0.000956
48900 1 0.000956
49800 1 0.000956
53100 1 0.000955
53600 1 0.000956
55700 1 0.000955
59200 1 0.000956
60200 1 0.000955
60600 1 0.000955
63100 1 0.000956
63400 1 0.000955
63900 1 0.000955
66800 1 0.000956
67900 1 0.000955
70800 1 0.000955
74000 1 0.000955
77700 1 0.000956
79400 1 0.000956
79600 1 0.000956
80300 1 0.000956
82100 1 0.000955
85000 1 0.000955
89900 1 0.000956
103000 1 0.000956
110000 1 0.000956
110000 1 0.000956
136000 1 0.000956
146000 1 0.000956
149000 1 0.000956
160000 1 0.000956
166000 1 0.000956
186000 1 0.000956
199000 1 0.000956
212000 1 0.000956
213000 1 0.000956
213000 1 0.000956
213000 1 0.000956
214000 1 0.000956
216000 1 0.000956
218000 1 0.000956
220000 1 0.000956
222000 1 0.000956
226000 1 0.000956
234000 1 0.000956
243000 1 0.000956
246000 1 0.000956
248000 1 0.000956
254000 1 0.000956
255000 1 0.000956
255000 1 0.000956
258000 1 0.000956
259000 1 0.000956
260000 1 0.000956
262000 1 0.000956
262000 1 0.000956
269000 1 0.000956
277000 1 0.000956
283000 1 0.000956
286000 1 0.000956
298000 1 0.000956
308000 1 0.000956
312000 1 0.000956
317000 1 0.000956
319000 1 0.000956
330000 1 0.000956
332000 1 0.000956

CL174 ----> CL90

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No. of shared pairs: :162

CL174 ----> CL167

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No. of shared pairs: :153