Cluster no. 175

Cluster no. 175

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Cluster is part of supercluster: 1

Cluster characteristics:

size	7381
size_real	7381
ecount	296476
supercluster	1
annotations_summary	0.03% Class_I/LTR/Ty1_copia/Tork:Ty1-PROT 0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-GAG
pair_completeness	0.731003752345216
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00284514293456171
satellite_probability	9.81425038973844e-23
consensus	None
TAREAN_annotation	Other
orientation_score	1

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Tork Ty1-PROT Tork Ty1-PROT 2 0.00027

TatIV_Ogre Ty3-GAG TatIV_Ogre Ty3-GAG 1 0.00014

clusters with similarity:

Cluster	Number of similarity hits

73	2610
190	609
43	1
102	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

73	533	0.383
190	324	0.246
31	7	0.00128
23	5	0.00176
72	5	0.00277
6	4	0.000937
55	4	0.000949
179	4	0.00344
12300	4	0.00693
11	3	0.000746
13	3	0.00151
40	3	0.000743
41	3	0.000868
67	3	0.00113
1	2	5e-04
2	2	0.000332
7	2	0.000401
17	2	0.000322
22	2	0.000623
30	2	0.000489
32	2	0.001
36	2	0.000966
43	2	0.000647
45	2	0.000633
47	2	0.00067
57	2	0.00127
58	2	0.00145
69	2	0.00125
84	2	0.000961
92	2	0.00171
97	2	0.000955
100	2	0.00134
126	2	0.00119
259	2	0.00256
290	2	0.00313
159000	2	0.00348
195000	2	0.00348
4	1	0.000256
5	1	0.000478
8	1	0.000474
9	1	0.000319
10	1	0.000526
14	1	0.000261
15	1	0.000348
24	1	0.000282
27	1	0.000541
29	1	0.000431
34	1	0.000349
37	1	0.000278
42	1	0.000432
49	1	0.000452
51	1	0.000298
52	1	0.000425
56	1	0.00126
59	1	0.000614
60	1	0.000622
66	1	0.000302
71	1	0.000362
74	1	0.000504
76	1	0.000533
77	1	0.000557
83	1	0.000579
85	1	0.000537
88	1	0.000354
95	1	0.000667
98	1	0.000697
99	1	0.000812
102	1	0.00035
103	1	0.000397
106	1	0.000516
114	1	0.00084
118	1	0.000739
125	1	0.000767
132	1	0.000767
134	1	0.000556
136	1	0.000873
137	1	0.00067
146	1	0.000774
152	1	0.000438
153	1	0.000542
157	1	0.000752
164	1	0.00128
170	1	0.000615
173	1	0.000949
174	1	0.000618
176	1	0.00095
177	1	0.000995
193	1	0.000982
196	1	0.000622
201	1	0.00148
202	1	0.00114
209	1	0.00129
210	1	0.00138
215	1	0.00104
218	1	0.00129
220	1	0.00104
226	1	0.00128
230	1	0.00137
236	1	0.0016
238	1	0.00117
244	1	0.00147
245	1	0.000855
255	1	0.00099
256	1	0.00123
257	1	0.00144
271	1	0.00149
275	1	0.00157
301	1	0.00147
390	1	0.00161
497	1	0.00161
708	1	0.00169
833	1	0.00171
2960	1	0.00172
3920	1	0.00173
4440	1	0.00173
6720	1	0.00173
6920	1	0.00173
10700	1	0.00174
21500	1	0.00174
23800	1	0.00174
47900	1	0.00174
84100	1	0.00174
107000	1	0.00174
116000	1	0.00174
143000	1	0.00174
219000	1	0.00174
224000	1	0.00174
251000	1	0.00174
313000	1	0.00174

CL175 ----> CL73

No. of shared pairs: :533

CL175 ----> CL190

No. of shared pairs: :324