Cluster no. 176

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Cluster is part of supercluster: 89

Cluster characteristics:

size 7225
size_real 7225
ecount 67204
supercluster 89
annotations_summary 3.72% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT
2.48% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG
2.12% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-PROT
0.06% organelle/mitochondria
0.01% organelle/plastid
pair_completeness 0.76564027370479
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0073356401384083
satellite_probability 5.78030605032073e-22
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 4 0.00055
plastid plastid 1 0.00014
Athila Ty3-GAG Athila Ty3-GAG 179 0.02478
Athila Ty3-PROT Athila Ty3-PROT 153 0.02118
Athila Ty3-RT Athila Ty3-RT 269 0.03723

clusters with similarity:

Cluster Number of similarity hits
28 29
13 19
96 9
121 9
92 7
54 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
96 45 0.0311
121 34 0.0347
13 21 0.0111
2080 11 0.0225
18 7 0.00312
21 6 0.00219
2030 6 0.0123
12700 6 0.0124
7 5 0.00102
28 5 0.00269
3000 5 0.0103
12800 5 0.0103
15100 5 0.0104
9 4 0.00132
14 4 0.00107
16 4 0.00136
45 4 0.00131
86 4 0.00139
957 4 0.00812
1580 4 0.00816
3060 4 0.00821
3770 4 0.00825
8640 4 0.00827
23400 4 0.0083
20 3 0.000785
25 3 0.00133
26 3 0.00121
40 3 0.00076
92 3 0.00279
4120 3 0.00617
4530 3 0.00619
14000 3 0.00622
27600 3 0.00622
31200 3 0.00623
41900 3 0.00623
45800 3 0.00624
2 2 0.000337
17 2 0.000327
19 2 0.000869
23 2 0.000727
32 2 0.00105
36 2 0.00101
37 2 0.000571
43 2 0.000667
47 2 0.000692
48 2 0.000551
57 2 0.00135
58 2 0.00156
63 2 0.00059
64 2 0.0015
66 2 0.000623
72 2 0.00117
73 2 0.00154
76 2 0.00112
81 2 0.000752
84 2 0.00101
85 2 0.00113
93 2 0.00163
104 2 0.00156
115 2 0.000913
116 2 0.000805
118 2 0.00159
128 2 0.00171
137 2 0.00143
145 2 0.00107
156 2 0.00154
169 2 0.00167
201 2 0.00345
229 2 0.00184
250 2 0.00316
387 2 0.00396
1450 2 0.00412
2000 2 0.00411
3380 2 0.00412
6800 2 0.00413
7130 2 0.00412
11700 2 0.00415
15200 2 0.00415
17200 2 0.00415
20000 2 0.00415
21500 2 0.00416
25600 2 0.00415
28900 2 0.00416
34500 2 0.00415
38200 2 0.00416
43000 2 0.00416
48700 2 0.00416
56400 2 0.00416
60000 2 0.00416
61100 2 0.00416
66800 2 0.00416
69300 2 0.00416
73100 2 0.00416
74800 2 0.00416
83300 2 0.00416
85300 2 0.00416
101000 2 0.00416
168000 2 0.00416
190000 2 0.00416
204000 2 0.00416
208000 2 0.00416
223000 2 0.00416
270000 2 0.00416
279000 2 0.00416
288000 2 0.00416
290000 2 0.00416
296000 2 0.00416
303000 2 0.00416
322000 2 0.00416
1 1 0.000256
3 1 0.000249
8 1 0.000496
11 1 0.000255
22 1 0.000321
27 1 0.00057
29 1 0.000449
31 1 0.000186
33 1 0.000572
34 1 0.00036
35 1 0.000276
38 1 0.000611
39 1 0.000533
42 1 0.00045
46 1 0.000501
50 1 0.000485
52 1 0.000443
54 1 0.000693
67 1 0.000389
77 1 0.000588
82 1 0.000698
87 1 0.00057
88 1 0.000366
89 1 0.000569
98 1 0.000746
101 1 0.000511
102 1 0.000362
103 1 0.000412
105 1 0.000528
110 1 0.000753
111 1 0.000337
112 1 0.000891
113 1 0.000577
114 1 0.000912
117 1 0.000616
120 1 0.000575
123 1 0.000675
129 1 0.000946
132 1 0.000826
135 1 0.000704
141 1 0.000589
144 1 0.00103
148 1 0.000666
150 1 0.000696
158 1 0.000707
162 1 0.000614
163 1 0.000576
168 1 0.000622
171 1 0.000765
172 1 0.000616
173 1 0.00104
174 1 0.000656
175 1 0.00095
179 1 0.000936
181 1 0.000824
182 1 8e-04
184 1 0.00114
191 1 0.000714
194 1 0.00152
199 1 0.00134
211 1 0.00102
212 1 0.00124
213 1 0.000646
223 1 0.00124
224 1 0.00177
227 1 0.00128
239 1 0.00128
240 1 0.0018
262 1 0.00187
271 1 0.00173
278 1 0.00164
280 1 0.0015
301 1 0.00171
444 1 0.00192
515 1 0.00191
530 1 0.00187
543 1 0.00198
591 1 0.00198
702 1 0.00203
1020 1 0.00201
1070 1 0.002
1890 1 0.00203
1900 1 0.00204
2290 1 0.00205
2370 1 0.00205
2620 1 0.00206
2820 1 0.00206
2930 1 0.00205
3360 1 0.00206
3840 1 0.00206
4510 1 0.00207
5040 1 0.00206
5720 1 0.00207
5900 1 0.00207
6160 1 0.00207
6500 1 0.00207
6920 1 0.00207
7360 1 0.00207
7560 1 0.00206
8000 1 0.00207
8070 1 0.00207
8160 1 0.00208
8240 1 0.00208
9340 1 0.00207
9800 1 0.00207
10900 1 0.00208
11600 1 0.00208
12100 1 0.00207
14200 1 0.00208
15900 1 0.00207
18500 1 0.00207
20900 1 0.00208
21500 1 0.00207
24200 1 0.00208
26500 1 0.00208
28300 1 0.00207
29100 1 0.00207
29100 1 0.00208
30500 1 0.00208
36000 1 0.00208
38200 1 0.00208
39200 1 0.00208
42000 1 0.00208
42300 1 0.00208
43900 1 0.00208
45900 1 0.00208
47500 1 0.00208
48000 1 0.00208
49700 1 0.00208
52000 1 0.00208
53600 1 0.00208
56200 1 0.00208
56500 1 0.00208
56700 1 0.00208
59700 1 0.00208
61000 1 0.00208
63300 1 0.00208
69900 1 0.00208
70400 1 0.00208
76300 1 0.00208
79000 1 0.00208
86500 1 0.00208
90200 1 0.00208
96700 1 0.00208
1e+05 1 0.00208
105000 1 0.00208
111000 1 0.00208
111000 1 0.00208
136000 1 0.00208
141000 1 0.00208
142000 1 0.00208
144000 1 0.00208
190000 1 0.00208
196000 1 0.00208
202000 1 0.00208
208000 1 0.00208
212000 1 0.00208
213000 1 0.00208
216000 1 0.00208
217000 1 0.00208
224000 1 0.00208
250000 1 0.00208
250000 1 0.00208
267000 1 0.00208
269000 1 0.00208
282000 1 0.00208
297000 1 0.00208
299000 1 0.00208
317000 1 0.00208
327000 1 0.00208
329000 1 0.00208
343000 1 0.00208
346000 1 0.00208

CL176 ----> CL96

image

No. of shared pairs: :45

CL176 ----> CL121

image

No. of shared pairs: :34

CL176 ----> CL13

image

No. of shared pairs: :21

CL176 ----> CL2079

image

No. of shared pairs: :11